Variant report

Variant	rs6457765
Chromosome Location	chr6:34160945-34160946
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10807136	0.85[EUR][1000 genomes]
rs10807137	0.82[ASN][1000 genomes]
rs1187115	0.90[ASN][1000 genomes]
rs1187118	0.90[ASN][1000 genomes]
rs1211163	0.90[ASN][1000 genomes]
rs12214804	0.81[ASN][1000 genomes]
rs1592269	0.82[ASN][1000 genomes]
rs1776877	0.87[ASN][1000 genomes]
rs1776901	0.82[ASN][1000 genomes]
rs56348792	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7742369	0.88[ASN][1000 genomes]
rs7749848	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7751671	0.81[ASN][1000 genomes]
rs7774122	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9357174	0.84[ASN][1000 genomes]
rs9469738	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv462900	chr6:33932442-34195011	Bivalent/Poised TSS Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
2	nsv602843	chr6:33932442-34195011	Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Enhancers Genic enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
3	nsv432881	chr6:34026522-34213822	Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
4	nsv462902	chr6:34056726-34195011	Enhancers Bivalent/Poised TSS Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
5	nsv602862	chr6:34056726-34195011	Bivalent Enhancer Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
6	nsv885781	chr6:34110257-34247661	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
7	nsv462903	chr6:34110257-34263743	Enhancers Strong transcription Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
8	nsv602863	chr6:34110257-34263743	Weak transcription Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Strong transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
9	esv1816380	chr6:34110880-34206718	Transcr. at gene 5' and 3' Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	48 gene(s)	inside rSNPs	diseases
10	nsv981132	chr6:34150971-34162650	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:34147400-34162800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr6:34151000-34163800	Weak transcription	Right Atrium	heart
3	chr6:34151200-34163800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
4	chr6:34151600-34164200	Weak transcription	Primary T cells from cord blood	blood
5	chr6:34158200-34163600	Weak transcription	GM12878-XiMat	blood
6	chr6:34158400-34163800	Weak transcription	Primary T helper cells fromperipheralblood	blood
7	chr6:34158400-34163800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
8	chr6:34158400-34163800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
9	chr6:34158400-34163800	Weak transcription	Brain Hippocampus Middle	brain
10	chr6:34158400-34163800	Weak transcription	Brain Inferior Temporal Lobe	brain
11	chr6:34158400-34164000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
12	chr6:34158600-34163600	Weak transcription	Fetal Thymus	thymus
13	chr6:34158600-34163800	Weak transcription	Primary B cells from cord blood	blood
14	chr6:34158600-34163800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
15	chr6:34158600-34163800	Weak transcription	Primary T helper cells PMA-I stimulated	--
16	chr6:34158600-34163800	Weak transcription	K562	blood
17	chr6:34158800-34163600	Weak transcription	Primary B cells from peripheral blood	blood
18	chr6:34158800-34164000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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