Variant report

Variant	rs1592269
Chromosome Location	chr6:34183057-34183058
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CEBPB	chr6:34182867-34183143	K562	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr6:34160739..34183165-chr6:34199874..34216980,124	K562	blood:
2	chr6:34182735..34185425-chr6:34186291..34188532,2	K562	blood:
3	chr6:34179251..34181367-chr6:34182622..34184716,2	K562	blood:

Variant related genes	Relation type
CYCSP55	TF binding region
ENSG00000137309	Chromatin interaction
ENSG00000186577	Chromatin interaction
ENSG00000214810	Chromatin interaction

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10807136	1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs10807139	0.88[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs10947487	0.80[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs1150777	0.86[CHB][hapmap]
rs1150779	0.86[CHB][hapmap]
rs1150781	0.86[CHB][hapmap]
rs1187115	0.84[ASN][1000 genomes]
rs1187118	0.84[ASN][1000 genomes]
rs11967909	0.83[JPT][hapmap]
rs1211163	0.81[ASN][1000 genomes]
rs12214804	0.81[ASN][1000 genomes]
rs1573905	1.00[CHB][hapmap]
rs1759628	0.93[ASN][1000 genomes]
rs1759645	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs1776877	1.00[CHB][hapmap];0.92[JPT][hapmap]
rs1776897	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs1776898	0.81[ASN][1000 genomes]
rs1776899	0.97[ASN][1000 genomes]
rs1776901	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2780226	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs2797963	0.81[ASN][1000 genomes]
rs4711385	1.00[JPT][hapmap]
rs4713765	1.00[CHB][hapmap]
rs4713766	1.00[JPT][hapmap]
rs6457765	0.82[ASN][1000 genomes]
rs6457769	1.00[CHB][hapmap]
rs6909732	1.00[CHB][hapmap]
rs6911780	0.83[ASN][1000 genomes]
rs6913361	0.88[ASN][1000 genomes]
rs7740907	0.81[ASN][1000 genomes]
rs7742369	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs7749848	0.84[ASN][1000 genomes]
rs7751671	0.98[ASN][1000 genomes]
rs7774122	0.84[ASN][1000 genomes]
rs9357174	0.82[ASN][1000 genomes]
rs9366846	0.86[CHB][hapmap]
rs9394200	0.86[CHB][hapmap]
rs9469738	0.92[ASN][1000 genomes]
rs9469761	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv462900	chr6:33932442-34195011	Bivalent/Poised TSS Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
2	nsv602843	chr6:33932442-34195011	Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Enhancers Genic enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
3	nsv432881	chr6:34026522-34213822	Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
4	nsv462902	chr6:34056726-34195011	Enhancers Bivalent/Poised TSS Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
5	nsv602862	chr6:34056726-34195011	Bivalent Enhancer Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
6	nsv885781	chr6:34110257-34247661	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
7	nsv462903	chr6:34110257-34263743	Enhancers Strong transcription Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
8	nsv602863	chr6:34110257-34263743	Weak transcription Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Strong transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
9	esv1816380	chr6:34110880-34206718	Transcr. at gene 5' and 3' Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	48 gene(s)	inside rSNPs	diseases
10	nsv965712	chr6:34177749-34192058	Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:34176200-34190800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr6:34183000-34191000	Weak transcription	K562	blood

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