Variant report

Variant	rs9469738
Chromosome Location	chr6:34163241-34163242
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:15)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:15 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:34128602..34131011-chr6:34162766..34164424,2	MCF-7	breast:
2	chr6:34156581..34160896-chr6:34162763..34169787,10	K562	blood:
3	chr6:34141696..34145706-chr6:34162843..34164569,3	K562	blood:
4	chr6:34162046..34166050-chr6:34204269..34209042,4	MCF-7	breast:
5	chr6:34161256..34167016-chr6:34189422..34193988,6	K562	blood:
6	chr6:34162021..34165758-chr6:34380623..34387316,6	K562	blood:
7	chr6:34161256..34164388-chr6:34359301..34361572,4	K562	blood:
8	chr6:34160739..34183165-chr6:34199874..34216980,124	K562	blood:
9	chr6:34162948..34164566-chr6:34191693..34193324,2	MCF-7	breast:
10	chr6:34162257..34164398-chr6:34358966..34361141,2	MCF-7	breast:
11	chr6:34161815..34164629-chr6:34383451..34385385,2	MCF-7	breast:
12	chr6:34151306..34154507-chr6:34162844..34165811,3	K562	blood:
13	chr6:34162251..34164138-chr6:34203896..34205992,2	MCF-7	breast:
14	chr6:34163086..34165732-chr6:34214171..34216119,2	MCF-7	breast:
15	chr6:34157070..34159570-chr6:34163027..34164683,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000186577	Chromatin interaction
ENSG00000272325	Chromatin interaction
ENSG00000137309	Chromatin interaction
ENSG00000271231	Chromatin interaction

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10807136	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10807137	0.81[ASN][1000 genomes]
rs10807139	0.89[ASN][1000 genomes]
rs10947487	0.89[ASN][1000 genomes]
rs1187115	0.82[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs1187118	0.81[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs1211163	0.84[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs1592269	0.92[ASN][1000 genomes]
rs1759628	0.89[ASN][1000 genomes]
rs1776877	0.81[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs1776899	0.89[ASN][1000 genomes]
rs1776901	0.92[ASN][1000 genomes]
rs56348792	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6457765	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6913361	0.81[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs7742369	0.87[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs7749848	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7751671	0.90[ASN][1000 genomes]
rs7774122	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9357174	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv462900	chr6:33932442-34195011	Bivalent/Poised TSS Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
2	nsv602843	chr6:33932442-34195011	Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Enhancers Genic enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
3	nsv432881	chr6:34026522-34213822	Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
4	nsv462902	chr6:34056726-34195011	Enhancers Bivalent/Poised TSS Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
5	nsv602862	chr6:34056726-34195011	Bivalent Enhancer Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
6	nsv885781	chr6:34110257-34247661	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
7	nsv462903	chr6:34110257-34263743	Enhancers Strong transcription Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
8	nsv602863	chr6:34110257-34263743	Weak transcription Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Strong transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
9	esv1816380	chr6:34110880-34206718	Transcr. at gene 5' and 3' Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	48 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:34151000-34163800	Weak transcription	Right Atrium	heart
2	chr6:34151200-34163800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
3	chr6:34151600-34164200	Weak transcription	Primary T cells from cord blood	blood
4	chr6:34158200-34163600	Weak transcription	GM12878-XiMat	blood
5	chr6:34158400-34163800	Weak transcription	Primary T helper cells fromperipheralblood	blood
6	chr6:34158400-34163800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
7	chr6:34158400-34163800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
8	chr6:34158400-34163800	Weak transcription	Brain Hippocampus Middle	brain
9	chr6:34158400-34163800	Weak transcription	Brain Inferior Temporal Lobe	brain
10	chr6:34158400-34164000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
11	chr6:34158600-34163600	Weak transcription	Fetal Thymus	thymus
12	chr6:34158600-34163800	Weak transcription	Primary B cells from cord blood	blood
13	chr6:34158600-34163800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
14	chr6:34158600-34163800	Weak transcription	Primary T helper cells PMA-I stimulated	--
15	chr6:34158600-34163800	Weak transcription	K562	blood
16	chr6:34158800-34163600	Weak transcription	Primary B cells from peripheral blood	blood
17	chr6:34158800-34164000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
18	chr6:34162200-34163800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr6:34162600-34163600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
20	chr6:34162800-34163800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
21	chr6:34163000-34163400	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin

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