Variant report

Variant	rs1211163
Chromosome Location	chr6:34169775-34169776
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:34156581..34160896-chr6:34162763..34169787,10	K562	blood:
2	chr6:34160739..34183165-chr6:34199874..34216980,124	K562	blood:
3	chr6:34167374..34170140-chr6:34179886..34181492,2	K562	blood:
4	chr6:34167669..34170205-chr6:34175412..34177855,2	K562	blood:
5	chr6:34167038..34169921-chr6:34215422..34218180,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000137309	Chromatin interaction
ENSG00000186577	Chromatin interaction
ENSG00000271231	Chromatin interaction

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10807137	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1187115	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1187118	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12214804	0.91[ASN][1000 genomes]
rs1592269	0.81[ASN][1000 genomes]
rs1759627	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1759645	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1759646	0.87[ASN][1000 genomes]
rs1776877	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1776897	0.87[ASN][1000 genomes]
rs1776898	0.88[ASN][1000 genomes]
rs1776901	0.81[ASN][1000 genomes]
rs2780226	0.87[ASN][1000 genomes]
rs2797963	0.86[ASN][1000 genomes]
rs2797964	0.89[ASN][1000 genomes]
rs56348792	0.85[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs6457765	0.90[ASN][1000 genomes]
rs7742369	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7749848	0.83[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs7774122	0.84[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs9357174	0.91[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9469738	0.84[AMR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv462900	chr6:33932442-34195011	Bivalent/Poised TSS Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
2	nsv602843	chr6:33932442-34195011	Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Enhancers Genic enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
3	nsv432881	chr6:34026522-34213822	Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
4	nsv462902	chr6:34056726-34195011	Enhancers Bivalent/Poised TSS Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
5	nsv602862	chr6:34056726-34195011	Bivalent Enhancer Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
6	nsv885781	chr6:34110257-34247661	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
7	nsv462903	chr6:34110257-34263743	Enhancers Strong transcription Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
8	nsv602863	chr6:34110257-34263743	Weak transcription Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Strong transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
9	esv1816380	chr6:34110880-34206718	Transcr. at gene 5' and 3' Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	48 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:34164600-34170000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr6:34164800-34169800	Weak transcription	HUES6 Cell Line	embryonic stem cell
3	chr6:34164800-34169800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr6:34164800-34169800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr6:34164800-34169800	Weak transcription	Placenta	Placenta
6	chr6:34164800-34170000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr6:34164800-34170000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr6:34164800-34172200	Weak transcription	Right Atrium	heart
9	chr6:34165800-34169800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr6:34168200-34170000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr6:34168200-34170000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr6:34168600-34173400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
13	chr6:34168800-34169800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
14	chr6:34168800-34170000	Weak transcription	H1 Cell Line	embryonic stem cell
15	chr6:34169400-34170200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr6:34169600-34170200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
17	chr6:34169600-34170400	Enhancers	iPS-15b Cell Line	embryonic stem cell
18	chr6:34169600-34170600	Enhancers	K562	blood
19	chr6:34169600-34170800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr6:34169600-34171200	Enhancers	H9 Cell Line	embryonic stem cell

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