Variant report

Variant	rs1776877
Chromosome Location	chr6:34174908-34174909
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:34166525..34169280-chr6:34173395..34175146,2	MCF-7	breast:
2	chr6:34173602..34176530-chr6:34190625..34192254,2	MCF-7	breast:
3	chr6:34172775..34174956-chr6:34389663..34392243,2	MCF-7	breast:
4	chr6:34172530..34175474-chr6:34548744..34550732,2	K562	blood:
5	chr6:34160739..34183165-chr6:34199874..34216980,124	K562	blood:
6	chr6:34173652..34175726-chr6:34179204..34181498,2	MCF-7	breast:
7	chr6:34174661..34176507-chr6:34206258..34209121,2	MCF-7	breast:
8	chr6:34166357..34168455-chr6:34173499..34175129,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000137309	Chromatin interaction
ENSG00000186577	Chromatin interaction

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10807136	0.92[JPT][hapmap]
rs10807137	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1150777	0.88[CHB][hapmap]
rs1150779	0.88[CHB][hapmap]
rs1150781	0.88[CHB][hapmap]
rs1187115	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1187118	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1211163	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12214804	0.88[ASN][1000 genomes]
rs1573905	1.00[CHB][hapmap]
rs1592269	1.00[CHB][hapmap];0.92[JPT][hapmap]
rs1759627	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1759645	1.00[CEU][hapmap];0.88[CHB][hapmap];0.92[JPT][hapmap];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1759646	0.84[ASN][1000 genomes]
rs1776897	0.88[CHB][hapmap];0.92[JPT][hapmap];0.84[ASN][1000 genomes]
rs1776898	0.86[ASN][1000 genomes]
rs2780226	0.88[CHB][hapmap];0.92[JPT][hapmap];0.84[ASN][1000 genomes]
rs2797963	0.83[ASN][1000 genomes]
rs2797964	0.86[ASN][1000 genomes]
rs4711385	0.90[JPT][hapmap]
rs4713765	1.00[CHB][hapmap]
rs4713766	0.92[JPT][hapmap]
rs56348792	0.82[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs6457765	0.87[ASN][1000 genomes]
rs6457769	1.00[CHB][hapmap]
rs6909732	1.00[CHB][hapmap]
rs7742369	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7749848	0.94[ASN][1000 genomes]
rs7774122	0.81[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs9357174	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9366846	0.81[CEU][hapmap];0.88[CHB][hapmap]
rs9394200	0.88[CHB][hapmap]
rs9469738	0.81[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs9469761	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv462900	chr6:33932442-34195011	Bivalent/Poised TSS Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
2	nsv602843	chr6:33932442-34195011	Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Enhancers Genic enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
3	nsv432881	chr6:34026522-34213822	Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
4	nsv462902	chr6:34056726-34195011	Enhancers Bivalent/Poised TSS Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
5	nsv602862	chr6:34056726-34195011	Bivalent Enhancer Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
6	nsv885781	chr6:34110257-34247661	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
7	nsv462903	chr6:34110257-34263743	Enhancers Strong transcription Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
8	nsv602863	chr6:34110257-34263743	Weak transcription Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Strong transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
9	esv1816380	chr6:34110880-34206718	Transcr. at gene 5' and 3' Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	48 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:34170000-34175600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr6:34171200-34177200	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr6:34171400-34175600	Weak transcription	K562	blood
4	chr6:34173200-34175200	Enhancers	ES-I3 Cell Line	embryonic stem cell
5	chr6:34173400-34175000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr6:34173400-34175000	Enhancers	HUES64 Cell Line	embryonic stem cell
7	chr6:34173400-34176200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr6:34173600-34175800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr6:34173800-34175600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr6:34174000-34176000	Weak transcription	Right Ventricle	heart
11	chr6:34174800-34175000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
12	chr6:34174800-34175600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
13	chr6:34174800-34175800	Enhancers	Primary T cells fromperipheralblood	blood

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