Variant report

Variant	rs11967530
Chromosome Location	chr6:131265940-131265941
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:131265482..131267662-chr6:131299441..131302281,2	K562	blood:

Variant related genes	Relation type
ENSG00000079819	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs11961619	1.00[AMR][1000 genomes]
rs11962530	0.92[MKK][hapmap];0.81[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11963137	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11966199	0.84[YRI][hapmap]
rs11968389	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60039283	0.82[AFR][1000 genomes]
rs60059704	0.82[AFR][1000 genomes]
rs61267803	1.00[AMR][1000 genomes]
rs6916434	1.00[MEX][hapmap];0.82[MKK][hapmap];0.85[YRI][hapmap];1.00[AMR][1000 genomes]

No data

Chromatin state (count:76 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:131220600-131281200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
2	chr6:131234800-131266600	Weak transcription	GM12878-XiMat	blood
3	chr6:131244200-131279000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
4	chr6:131251200-131268200	Weak transcription	Right Atrium	heart
5	chr6:131253000-131272800	Weak transcription	Dnd41	blood
6	chr6:131253000-131302200	Weak transcription	Primary B cells from cord blood	blood
7	chr6:131255000-131274600	Weak transcription	Fetal Stomach	stomach
8	chr6:131255200-131276000	Weak transcription	Left Ventricle	heart
9	chr6:131255400-131276200	Weak transcription	Duodenum Smooth Muscle	Duodenum
10	chr6:131255400-131288800	Weak transcription	Fetal Kidney	kidney
11	chr6:131255800-131276200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr6:131255800-131277400	Weak transcription	Psoas Muscle	Psoas
13	chr6:131256000-131279400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr6:131257200-131270200	Weak transcription	Fetal Muscle Leg	muscle
15	chr6:131257400-131281800	Weak transcription	Colon Smooth Muscle	Colon
16	chr6:131259800-131268200	Weak transcription	HSMM	muscle
17	chr6:131260000-131286200	Weak transcription	HSMMtube	muscle
18	chr6:131260200-131266800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr6:131260200-131266800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
20	chr6:131263600-131272800	Weak transcription	Fetal Muscle Trunk	muscle
21	chr6:131264400-131267200	Enhancers	Fetal Intestine Small	intestine
22	chr6:131264400-131267200	Enhancers	Stomach Mucosa	stomach
23	chr6:131264400-131269200	Enhancers	HepG2	liver
24	chr6:131264600-131266000	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr6:131264600-131266800	Enhancers	Brain Substantia Nigra	brain
26	chr6:131264600-131266800	Enhancers	Fetal Intestine Large	intestine
27	chr6:131264600-131267000	Enhancers	Rectal Mucosa Donor 31	rectum
28	chr6:131264600-131267200	Enhancers	Brain Inferior Temporal Lobe	brain
29	chr6:131264600-131267200	Enhancers	Sigmoid Colon	Sigmoid Colon
30	chr6:131264600-131267400	Enhancers	Brain Hippocampus Middle	brain
31	chr6:131264600-131267600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr6:131264600-131267800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
33	chr6:131264600-131268200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
34	chr6:131264800-131266000	Enhancers	Adipose Nuclei	Adipose
35	chr6:131264800-131266600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
36	chr6:131264800-131266800	Enhancers	Brain Cingulate Gyrus	brain
37	chr6:131264800-131267000	Enhancers	Brain Angular Gyrus	brain
38	chr6:131264800-131267400	Enhancers	Breast Myoepithelial Primary Cells	Breast
39	chr6:131264800-131267600	Enhancers	HUES6 Cell Line	embryonic stem cell
40	chr6:131264800-131267600	Enhancers	Fetal Lung	lung
41	chr6:131264800-131277800	Weak transcription	Gastric	stomach
42	chr6:131265000-131266600	Enhancers	Ovary	ovary
43	chr6:131265000-131266800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
44	chr6:131265000-131267200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
45	chr6:131265000-131267400	Enhancers	HUES48 Cell Line	embryonic stem cell
46	chr6:131265000-131267800	Enhancers	HUES64 Cell Line	embryonic stem cell
47	chr6:131265000-131269000	Enhancers	NHLF	lung
48	chr6:131265200-131266000	Weak transcription	NHDF-Ad	bronchial
49	chr6:131265200-131266800	Enhancers	Aorta	Aorta
50	chr6:131265200-131267200	Enhancers	Small Intestine	intestine

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