Variant report

Variant	rs6916434
Chromosome Location	chr6:131351741-131351742
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:131345332..131348195-chr6:131348850..131352317,3	MCF-7	breast:
2	chr6:131303458..131306255-chr6:131349749..131352593,2	K562	blood:
3	chr6:131322621..131325440-chr6:131350090..131351837,2	K562	blood:

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs11961619	1.00[AMR][1000 genomes]
rs11962530	1.00[AMR][1000 genomes]
rs11963137	1.00[AMR][1000 genomes]
rs11966670	1.00[MEX][hapmap]
rs11967530	1.00[MEX][hapmap];0.82[MKK][hapmap];0.85[YRI][hapmap];1.00[AMR][1000 genomes]
rs11968389	1.00[AMR][1000 genomes]
rs1332492	0.81[ASW][hapmap]
rs1855078	0.81[ASW][hapmap]
rs61267803	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1032955	chr6:131298803-131818502	Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv538443	chr6:131298803-131818502	Active TSS Weak transcription ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:59 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:131345800-131352000	Weak transcription	Lung	lung
2	chr6:131345800-131353200	Weak transcription	Ovary	ovary
3	chr6:131345800-131353800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr6:131345800-131357600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr6:131346000-131375000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr6:131349000-131358800	Weak transcription	Pancreas	Pancrea
7	chr6:131350000-131351800	Enhancers	A549	lung
8	chr6:131350000-131351800	Enhancers	HepG2	liver
9	chr6:131350000-131353200	Enhancers	Brain Anterior Caudate	brain
10	chr6:131350200-131351800	Enhancers	iPS-20b Cell Line	embryonic stem cell
11	chr6:131350200-131352000	Enhancers	HSMM	muscle
12	chr6:131350600-131351800	Enhancers	HUES64 Cell Line	embryonic stem cell
13	chr6:131350600-131351800	Enhancers	iPS-18 Cell Line	embryonic stem cell
14	chr6:131350600-131352000	Enhancers	Cortex derived primary cultured neurospheres	brain
15	chr6:131350600-131352000	Enhancers	Brain Cingulate Gyrus	brain
16	chr6:131350800-131352000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr6:131350800-131352000	Enhancers	Fetal Muscle Leg	muscle
18	chr6:131350800-131352200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
19	chr6:131350800-131352200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
20	chr6:131350800-131352200	Enhancers	Brain Substantia Nigra	brain
21	chr6:131351000-131352200	Enhancers	ES-I3 Cell Line	embryonic stem cell
22	chr6:131351000-131352200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
23	chr6:131351000-131352400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
24	chr6:131351200-131352200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
25	chr6:131351200-131352200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
26	chr6:131351200-131352200	Enhancers	Brain Germinal Matrix	brain
27	chr6:131351200-131352200	Enhancers	Fetal Muscle Trunk	muscle
28	chr6:131351200-131352200	Enhancers	Left Ventricle	heart
29	chr6:131351200-131352200	Enhancers	Right Atrium	heart
30	chr6:131351400-131352000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr6:131351400-131352000	Enhancers	NH-A	brain
32	chr6:131351400-131354400	Weak transcription	Rectal Smooth Muscle	rectum
33	chr6:131351400-131356200	Weak transcription	Brain Angular Gyrus	brain
34	chr6:131351400-131356200	Weak transcription	Sigmoid Colon	Sigmoid Colon
35	chr6:131351400-131356400	Weak transcription	Duodenum Mucosa	Duodenum
36	chr6:131351400-131356400	Weak transcription	Rectal Mucosa Donor 31	rectum
37	chr6:131351400-131356800	Weak transcription	Fetal Intestine Small	intestine
38	chr6:131351400-131357400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
39	chr6:131351400-131359800	Weak transcription	Duodenum Smooth Muscle	Duodenum
40	chr6:131351400-131360200	Weak transcription	Small Intestine	intestine
41	chr6:131351400-131361400	Weak transcription	Psoas Muscle	Psoas
42	chr6:131351400-131375000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
43	chr6:131351600-131351800	Active TSS	GM12878-XiMat	blood
44	chr6:131351600-131351800	Enhancers	Osteobl	bone
45	chr6:131351600-131352200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
46	chr6:131351600-131352200	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
47	chr6:131351600-131352200	Enhancers	NHDF-Ad	bronchial
48	chr6:131351600-131352200	Enhancers	NHLF	lung
49	chr6:131351600-131355200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
50	chr6:131351600-131356200	Weak transcription	Fetal Intestine Large	intestine

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links