Variant report

Variant rs1196842
Chromosome Location chr12:105500390-105500391
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:30 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr12:105494800-105500600 Weak transcription NH-A brain
2 chr12:105495000-105500400 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
3 chr12:105495000-105500400 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
4 chr12:105495000-105500400 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
5 chr12:105495000-105500400 Weak transcription Osteobl bone
6 chr12:105495000-105500600 Weak transcription NHDF-Ad bronchial
7 chr12:105495000-105500800 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
8 chr12:105495200-105500400 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
9 chr12:105499800-105500400 Enhancers Ganglion Eminence derived primary cultured neurospheres brain
10 chr12:105500000-105500400 Enhancers GM12878-XiMat blood
11 chr12:105500000-105500600 Weak transcription NHLF lung
12 chr12:105500200-105500400 Enhancers Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
13 chr12:105500200-105500400 Enhancers Foreskin Keratinocyte Primary Cells skin03 Skin
14 chr12:105500200-105500400 Enhancers Liver Liver
15 chr12:105500200-105500400 Enhancers A549 lung
16 chr12:105500200-105500400 Enhancers HepG2 liver
17 chr12:105500200-105500400 Enhancers HMEC breast
18 chr12:105500200-105500600 Enhancers H1 Cell Line embryonic stem cell
19 chr12:105500200-105500600 Enhancers Breast Myoepithelial Primary Cells Breast
20 chr12:105500200-105500600 Enhancers Foreskin Keratinocyte Primary Cells skin02 Skin
21 chr12:105500200-105500600 Enhancers Colon Smooth Muscle Colon
22 chr12:105500200-105500600 Bivalent Enhancer Dnd41 blood
23 chr12:105500200-105500800 Enhancers Fetal Intestine Small intestine
24 chr12:105500200-105501000 Flanking Active TSS NHEK skin
25 chr12:105500200-105501400 Active TSS Foreskin Fibroblast Primary Cells skin02 Skin
26 chr12:105500200-105502400 Active TSS Brain Inferior Temporal Lobe brain
27 chr12:105500200-105502400 Active TSS Brain Dorsolateral Prefrontal Cortex brain
28 chr12:105500200-105502800 Active TSS Cortex derived primary cultured neurospheres brain
29 chr12:105500200-105503000 Active TSS HUES64 Cell Line embryonic stem cell
30 chr12:105500200-105504000 Active TSS Brain Anterior Caudate brain

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