Variant report

Variant	rs10861371
Chromosome Location	chr12:105676924-105676925
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:105626966..105630516-chr12:105673384..105677025,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000235162	Chromatin interaction
ENSG00000136044	Chromatin interaction

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs10861347	1.00[CHB][hapmap]
rs10861388	0.80[AMR][1000 genomes]
rs10861396	0.83[AMR][1000 genomes]
rs10861400	1.00[CHB][hapmap]
rs10861407	1.00[CHB][hapmap]
rs10861409	1.00[CHB][hapmap]
rs11112434	1.00[CHB][hapmap]
rs11112465	0.82[MEX][hapmap]
rs11112475	1.00[CHB][hapmap]
rs11513891	0.83[AMR][1000 genomes]
rs11519725	0.83[AMR][1000 genomes]
rs11613637	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11613789	0.83[AMR][1000 genomes]
rs1196748	1.00[CHB][hapmap]
rs1196749	1.00[CHB][hapmap]
rs1196753	1.00[CHB][hapmap]
rs1196754	1.00[CHB][hapmap]
rs1196756	1.00[CHB][hapmap]
rs1196760	1.00[CHB][hapmap]
rs1196777	1.00[CHB][hapmap]
rs1196793	1.00[CHB][hapmap]
rs1196800	1.00[CHB][hapmap]
rs1196801	1.00[CHB][hapmap]
rs1196806	1.00[CHB][hapmap]
rs1196813	1.00[CHB][hapmap]
rs1196817	1.00[CHB][hapmap]
rs1196818	1.00[CHB][hapmap]
rs1196819	1.00[CHB][hapmap]
rs1196839	1.00[CHB][hapmap]
rs1196842	1.00[CHB][hapmap]
rs1196848	1.00[CHB][hapmap]
rs1196852	1.00[CHB][hapmap]
rs1196861	1.00[CHB][hapmap]
rs1196862	1.00[CHB][hapmap]
rs1196864	1.00[CHB][hapmap]
rs1196881	1.00[CHB][hapmap]
rs1211276	1.00[CHB][hapmap]
rs12822081	1.00[ASW][hapmap];0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12827086	0.84[AMR][1000 genomes]
rs1621553	1.00[CHB][hapmap]
rs1663564	1.00[CHB][hapmap]
rs2440715	1.00[CHB][hapmap]
rs2888846	1.00[CHB][hapmap]
rs35225620	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35801994	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4390426	1.00[CHB][hapmap]
rs4545651	1.00[CHB][hapmap]
rs7299225	1.00[CHB][hapmap];1.00[MEX][hapmap]
rs7302174	1.00[CHB][hapmap]
rs7959385	1.00[CHB][hapmap];0.82[MEX][hapmap]
rs7972982	0.83[AMR][1000 genomes]
rs935240	1.00[CHB][hapmap]
rs935241	1.00[CHB][hapmap]
rs935244	1.00[CHB][hapmap]
rs9645791	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv899499	chr12:105616297-105722529	Bivalent Enhancer Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	nsv1044450	chr12:105668451-105682822	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv510589	chr12:105670071-105743755	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:105675800-105681200	Weak transcription	Stomach Mucosa	stomach
2	chr12:105676200-105681400	Weak transcription	HepG2	liver
3	chr12:105676400-105681400	Weak transcription	A549	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links