Variant report

Variant	rs35225620
Chromosome Location	chr12:105667416-105667417
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10861371	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10861388	0.80[AMR][1000 genomes]
rs10861396	0.83[AMR][1000 genomes]
rs11513891	0.83[AMR][1000 genomes]
rs11519725	0.83[AMR][1000 genomes]
rs11613637	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11613789	0.83[AMR][1000 genomes]
rs12822081	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12827086	0.84[AMR][1000 genomes]
rs35801994	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7972982	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv899499	chr12:105616297-105722529	Bivalent Enhancer Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:105659600-105672200	Weak transcription	Aorta	Aorta
2	chr12:105661800-105668400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr12:105664600-105672200	Weak transcription	HSMM	muscle
4	chr12:105665000-105674200	Weak transcription	Osteobl	bone
5	chr12:105665600-105674800	Weak transcription	NHDF-Ad	bronchial
6	chr12:105665800-105667800	Enhancers	NHEK	skin
7	chr12:105666000-105667800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr12:105666200-105667600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr12:105666400-105668200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr12:105666600-105667800	Enhancers	HMEC	breast
11	chr12:105667400-105667600	Enhancers	ES-I3 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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