Variant report

Variant	rs11613637
Chromosome Location	chr12:105663403-105663404
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10861371	0.94[CEU][hapmap];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1196780	1.00[JPT][hapmap]
rs1209637	1.00[JPT][hapmap]
rs12822081	1.00[CEU][hapmap];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs35225620	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs35801994	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs61480639	0.91[ASN][1000 genomes]
rs73399757	0.83[ASN][1000 genomes]
rs73399760	0.94[ASN][1000 genomes]
rs73399763	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv899499	chr12:105616297-105722529	Bivalent Enhancer Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:105659600-105672200	Weak transcription	Aorta	Aorta
2	chr12:105661800-105668400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr12:105662200-105663800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr12:105662200-105663800	Weak transcription	HSMM	muscle
5	chr12:105662400-105663800	Weak transcription	Placenta Amnion	Placenta Amnion
6	chr12:105662400-105664200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr12:105662800-105665000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr12:105662800-105665600	Enhancers	NHDF-Ad	bronchial
9	chr12:105663000-105663600	Weak transcription	Pancreatic Islets	Pancreatic Islet
10	chr12:105663000-105664400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr12:105663000-105665000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr12:105663200-105665400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr12:105663400-105663600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
14	chr12:105663400-105663600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
15	chr12:105663400-105664400	Enhancers	Osteobl	bone
16	chr12:105663400-105665800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links