Variant report

Variant	rs73399763
Chromosome Location	chr12:105676083-105676084
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:105626966..105630516-chr12:105673384..105677025,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000235162	Chromatin interaction
ENSG00000136044	Chromatin interaction

Extended variants
information (count: 71 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:68)

rs_ID	r²[population]
rs11613637	0.83[ASN][1000 genomes]
rs12308444	0.93[ASN][1000 genomes]
rs12321534	0.93[ASN][1000 genomes]
rs17036919	0.84[ASN][1000 genomes]
rs17036923	1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1882148	1.00[AMR][1000 genomes]
rs2116676	1.00[EUR][1000 genomes]
rs2116677	1.00[EUR][1000 genomes]
rs3763991	1.00[AMR][1000 genomes]
rs4372554	1.00[EUR][1000 genomes]
rs4544094	1.00[EUR][1000 genomes]
rs57448746	1.00[AMR][1000 genomes]
rs57618699	1.00[AMR][1000 genomes]
rs57877894	1.00[EUR][1000 genomes]
rs58969183	1.00[AMR][1000 genomes]
rs59143432	1.00[AMR][1000 genomes]
rs59935781	1.00[AMR][1000 genomes]
rs60294187	1.00[AMR][1000 genomes]
rs60495600	1.00[AMR][1000 genomes]
rs61336075	1.00[AMR][1000 genomes]
rs61437377	1.00[AMR][1000 genomes]
rs61480639	0.87[ASN][1000 genomes]
rs72487518	1.00[EUR][1000 genomes]
rs7294681	1.00[AMR][1000 genomes]
rs7296708	1.00[EUR][1000 genomes]
rs7297845	1.00[AMR][1000 genomes]
rs7314155	1.00[AMR][1000 genomes]
rs73397621	1.00[AMR][1000 genomes]
rs73397624	1.00[AMR][1000 genomes]
rs73397654	1.00[AMR][1000 genomes]
rs73397655	1.00[AMR][1000 genomes]
rs73397656	1.00[AMR][1000 genomes]
rs73397659	1.00[AMR][1000 genomes]
rs73397660	1.00[AMR][1000 genomes]
rs73397661	1.00[AMR][1000 genomes]
rs73397663	1.00[AMR][1000 genomes]
rs73397672	1.00[AMR][1000 genomes]
rs73397677	1.00[AMR][1000 genomes]
rs73397678	1.00[AMR][1000 genomes]
rs73397680	1.00[AMR][1000 genomes]
rs73397683	1.00[AMR][1000 genomes]
rs73397684	1.00[AMR][1000 genomes]
rs73397685	1.00[AMR][1000 genomes]
rs73397687	1.00[AMR][1000 genomes]
rs73397688	1.00[AMR][1000 genomes]
rs73397690	1.00[AMR][1000 genomes]
rs73397700	1.00[AMR][1000 genomes]
rs73397701	1.00[AMR][1000 genomes]
rs73399708	1.00[AMR][1000 genomes]
rs73399717	1.00[AMR][1000 genomes]
rs73399720	1.00[AMR][1000 genomes]
rs73399724	1.00[AMR][1000 genomes]
rs73399728	1.00[AMR][1000 genomes]
rs73399730	1.00[AMR][1000 genomes]
rs73399742	1.00[AMR][1000 genomes]
rs73399757	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73399760	1.00[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs73399769	1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs73399775	1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs73399778	1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs73399779	1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs73399781	1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs73399782	1.00[EUR][1000 genomes]
rs73399787	1.00[EUR][1000 genomes]
rs73399794	1.00[EUR][1000 genomes]
rs73401704	1.00[EUR][1000 genomes]
rs73401705	1.00[EUR][1000 genomes]
rs73401708	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv899499	chr12:105616297-105722529	Bivalent Enhancer Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	nsv1044450	chr12:105668451-105682822	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv510589	chr12:105670071-105743755	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:105673200-105676200	Enhancers	HepG2	liver
2	chr12:105674000-105676200	Enhancers	Fetal Intestine Large	intestine
3	chr12:105674000-105676400	Flanking Active TSS	A549	lung
4	chr12:105674200-105676200	Enhancers	Fetal Intestine Small	intestine
5	chr12:105674200-105676400	Enhancers	Pancreatic Islets	Pancreatic Islet
6	chr12:105674800-105676200	Enhancers	Rectal Mucosa Donor 31	rectum
7	chr12:105675800-105681200	Weak transcription	Stomach Mucosa	stomach

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