Variant report

Variant	rs73399779
Chromosome Location	chr12:105684758-105684759
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:105682564..105686688-chr12:105688570..105690485,3	K562	blood:
2	chr12:105683253..105685363-chr12:105687997..105690070,2	K562	blood:

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs17036919	1.00[ASN][1000 genomes]
rs17036923	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2116676	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2116677	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4372554	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4544094	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs57393988	1.00[AMR][1000 genomes]
rs57456392	1.00[AMR][1000 genomes]
rs57877894	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs58301361	1.00[AMR][1000 genomes]
rs59811168	1.00[AMR][1000 genomes]
rs60725801	1.00[AMR][1000 genomes]
rs61042175	1.00[AMR][1000 genomes]
rs72487518	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7296708	1.00[EUR][1000 genomes]
rs7307834	1.00[AMR][1000 genomes]
rs73395723	1.00[AMR][1000 genomes]
rs73395740	1.00[AMR][1000 genomes]
rs73395744	1.00[AMR][1000 genomes]
rs73395745	1.00[AMR][1000 genomes]
rs73395746	1.00[AMR][1000 genomes]
rs73395758	1.00[AMR][1000 genomes]
rs73395770	1.00[AMR][1000 genomes]
rs73395771	1.00[AMR][1000 genomes]
rs73395772	1.00[AMR][1000 genomes]
rs73395783	1.00[AMR][1000 genomes]
rs73395785	1.00[AMR][1000 genomes]
rs73399757	0.84[ASN][1000 genomes]
rs73399763	1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs73399769	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73399775	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73399778	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73399781	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73399782	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73399787	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73399794	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs73401704	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73401705	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73401708	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9668528	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv899499	chr12:105616297-105722529	Bivalent Enhancer Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	nsv510589	chr12:105670071-105743755	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:105681600-105686200	Weak transcription	A549	lung
2	chr12:105682400-105686200	Weak transcription	Stomach Mucosa	stomach
3	chr12:105682800-105686600	Weak transcription	Osteobl	bone
4	chr12:105683000-105685200	Enhancers	HepG2	liver
5	chr12:105683400-105686400	Weak transcription	Muscle Satellite Cultured Cells	--
6	chr12:105683400-105688600	Weak transcription	NHEK	skin
7	chr12:105683600-105686000	Weak transcription	HUVEC	blood vessel

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