Variant report

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs17036919	1.00[ASN][1000 genomes]
rs17036923	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2116676	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2116677	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4372554	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4544094	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs57877894	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72487518	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7296708	1.00[EUR][1000 genomes]
rs73399757	0.84[ASN][1000 genomes]
rs73399763	1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs73399775	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73399778	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73399779	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73399781	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73399782	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73399787	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73399794	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs73401704	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73401705	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73401708	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv899499	chr12:105616297-105722529	Bivalent Enhancer Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	nsv1044450	chr12:105668451-105682822	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv510589	chr12:105670071-105743755	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	esv3656	chr12:105680909-105681748	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
5	nsv826508	chr12:105680952-105681730	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:105681200-105682400	Enhancers	Stomach Mucosa	stomach
2	chr12:105681400-105681800	Enhancers	HepG2	liver
3	chr12:105681600-105682200	Enhancers	Gastric	stomach
4	chr12:105681600-105686200	Weak transcription	A549	lung

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