Variant report

Variant	rs61480639
Chromosome Location	chr12:105661953-105661954
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs11613637	0.91[ASN][1000 genomes]
rs12308444	0.85[ASN][1000 genomes]
rs12321534	0.80[ASN][1000 genomes]
rs73399757	0.87[ASN][1000 genomes]
rs73399760	0.98[ASN][1000 genomes]
rs73399763	0.87[ASN][1000 genomes]
rs73399782	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv899499	chr12:105616297-105722529	Bivalent Enhancer Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:105659600-105672200	Weak transcription	Aorta	Aorta
2	chr12:105661400-105662200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr12:105661400-105662200	Enhancers	HSMM	muscle
4	chr12:105661400-105662400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr12:105661400-105662400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr12:105661400-105662400	Enhancers	Placenta Amnion	Placenta Amnion
7	chr12:105661400-105662400	Enhancers	HSMMtube	muscle
8	chr12:105661800-105662200	Enhancers	Fetal Lung	lung
9	chr12:105661800-105662400	Enhancers	NHDF-Ad	bronchial
10	chr12:105661800-105668400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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