Variant report

Variant	rs73399742
Chromosome Location	chr12:105658573-105658574
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:105625530..105628305-chr12:105656040..105658851,2	MCF-7	breast:
2	chr12:105646719..105649373-chr12:105657582..105659204,2	K562	blood:

Variant related genes	Relation type
ENSG00000136044	Chromatin interaction

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs1882148	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs3763991	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs57448746	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs57618699	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs58301361	1.00[ASN][1000 genomes]
rs58969183	1.00[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs59143432	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs59935781	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs60294187	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs60495600	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61336075	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61437377	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7294681	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7297845	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7314155	1.00[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs73397621	1.00[AMR][1000 genomes]
rs73397624	1.00[AMR][1000 genomes]
rs73397654	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73397655	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73397656	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73397659	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73397660	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73397661	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73397663	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73397672	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73397677	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73397678	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73397680	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73397683	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73397684	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73397685	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73397687	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73397688	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73397690	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73397700	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73397701	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73399708	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73399717	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73399720	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73399724	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73399728	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73399730	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73399757	1.00[AMR][1000 genomes]
rs73399760	1.00[AMR][1000 genomes]
rs73399763	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv899499	chr12:105616297-105722529	Bivalent Enhancer Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:105652600-105661400	Weak transcription	HSMMtube	muscle
2	chr12:105653400-105661400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr12:105653400-105661400	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr12:105656600-105661400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr12:105657200-105661800	Weak transcription	NHDF-Ad	bronchial

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