Variant report

Variant	rs11969714
Chromosome Location	chr6:132342669-132342670
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	6:132269655-132282174..6:132341777-132344161	GM12878	blood:

Variant related genes	Relation type
ENSG00000227220	Chromatin interaction
ENSG00000118523	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs2022388	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs35881065	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs60594390	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs67021017	0.86[AFR][1000 genomes];0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs67625625	0.86[AFR][1000 genomes];0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv470861	chr6:132291785-132351866	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
2	nsv886672	chr6:132299748-132349215	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
3	nsv886673	chr6:132299748-132363507	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
4	nsv427768	chr6:132300468-132398477	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:132340200-132346800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr6:132340600-132344000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr6:132340800-132343400	Enhancers	Colon Smooth Muscle	Colon
4	chr6:132340800-132343800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr6:132340800-132344600	Enhancers	Breast Myoepithelial Primary Cells	Breast
6	chr6:132340800-132345000	Enhancers	HepG2	liver
7	chr6:132341000-132343600	Enhancers	Muscle Satellite Cultured Cells	--
8	chr6:132341600-132343000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr6:132341600-132343000	Weak transcription	Fetal Intestine Small	intestine
10	chr6:132341600-132343200	Weak transcription	Brain Substantia Nigra	brain
11	chr6:132341600-132343400	Weak transcription	Ovary	ovary
12	chr6:132341600-132343800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr6:132341800-132342800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr6:132341800-132342800	Weak transcription	Fetal Intestine Large	intestine
15	chr6:132341800-132343000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
16	chr6:132341800-132343000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr6:132341800-132343000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr6:132341800-132343000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr6:132341800-132343000	Weak transcription	Rectal Smooth Muscle	rectum
20	chr6:132341800-132343000	Weak transcription	HSMMtube	muscle
21	chr6:132342000-132343000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr6:132342000-132343000	Weak transcription	A549	lung
23	chr6:132342200-132343200	Weak transcription	Duodenum Smooth Muscle	Duodenum
24	chr6:132342200-132343200	Weak transcription	HSMM	muscle

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