Variant report
| Variant | rs35881065 |
|---|---|
| Chromosome Location | chr6:132365032-132365033 |
| allele | A/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:2)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:2 , 50 per page) page:
1
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000227220 | Chromatin interaction |
| ENSG00000079931 | Chromatin interaction |
| ENSG00000118523 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:34)
| rs_ID | r2[population] |
|---|---|
| rs11961001 | 0.81[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs11962845 | 0.82[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs11967791 | 0.82[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs11969714 | 0.80[AMR][1000 genomes];0.81[EUR][1000 genomes] |
| rs13203667 | 0.80[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs13209044 | 0.95[ASN][1000 genomes] |
| rs13209246 | 0.81[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs13214079 | 0.82[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs17060999 | 0.86[ASN][1000 genomes] |
| rs17061002 | 0.86[ASN][1000 genomes] |
| rs17061005 | 0.86[ASN][1000 genomes] |
| rs17277038 | 0.81[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs1980442 | 0.93[ASN][1000 genomes] |
| rs2022388 | 0.81[EUR][1000 genomes] |
| rs34837500 | 0.81[ASN][1000 genomes] |
| rs34942968 | 0.86[ASN][1000 genomes] |
| rs35023618 | 0.93[ASN][1000 genomes] |
| rs35599250 | 0.93[ASN][1000 genomes] |
| rs4425614 | 0.84[ASN][1000 genomes] |
| rs56317827 | 0.83[ASN][1000 genomes] |
| rs60594390 | 0.81[EUR][1000 genomes] |
| rs67021017 | 0.96[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs67625625 | 0.96[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs67724714 | 0.83[ASN][1000 genomes] |
| rs68052689 | 0.82[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs6914252 | 0.84[ASN][1000 genomes] |
| rs6922298 | 0.82[ASN][1000 genomes] |
| rs71574604 | 0.80[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs7748412 | 0.84[ASN][1000 genomes] |
| rs7770114 | 0.84[ASN][1000 genomes] |
| rs7770134 | 0.84[ASN][1000 genomes] |
| rs9321320 | 0.81[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs9493173 | 0.93[ASN][1000 genomes] |
| rs9493175 | 0.81[EUR][1000 genomes];0.93[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv427768 | chr6:132300468-132398477 | Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS | Chromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
