Variant report

Variant	rs6914252
Chromosome Location	chr6:132377974-132377975
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	6:132269655-132282174..6:132373869-132383497	GM12878	blood:
2	6:132176847-132180372..6:132373869-132383497	K562	blood:
3	6:132182612-132191683..6:132373869-132383497	Hela-S3	cervix:

Variant related genes	Relation type
ENSG00000197594	Chromatin interaction
ENSG00000227220	Chromatin interaction
ENSG00000118523	Chromatin interaction

Extended variants
information (count: 69 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:57)

rs_ID	r²[population]
rs11961001	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs11962845	1.00[CHB][hapmap];0.82[JPT][hapmap];0.89[ASN][1000 genomes]
rs11965300	0.91[ASN][1000 genomes]
rs11967791	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs1206727	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1206728	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12332897	1.00[JPT][hapmap]
rs12662375	1.00[JPT][hapmap]
rs12665838	0.91[ASN][1000 genomes]
rs13203667	0.84[ASN][1000 genomes]
rs13209044	1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs13209246	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs13214059	0.91[ASN][1000 genomes]
rs13214079	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs13217734	0.91[ASN][1000 genomes]
rs17060999	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs17061002	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs17061005	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs17277038	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs1980442	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs2014218	0.87[ASN][1000 genomes]
rs34254593	0.87[ASN][1000 genomes]
rs34520677	0.91[ASN][1000 genomes]
rs34703643	0.91[ASN][1000 genomes]
rs34942968	0.98[ASN][1000 genomes]
rs35023618	0.86[ASN][1000 genomes]
rs35322316	0.91[ASN][1000 genomes]
rs35442626	0.87[ASN][1000 genomes]
rs35599250	0.91[ASN][1000 genomes]
rs35881065	0.84[ASN][1000 genomes]
rs4425614	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs55687705	0.87[ASN][1000 genomes]
rs55722159	0.91[ASN][1000 genomes]
rs56079441	0.91[ASN][1000 genomes]
rs56202806	0.91[ASN][1000 genomes]
rs56231728	0.91[ASN][1000 genomes]
rs60353841	0.87[ASN][1000 genomes]
rs68052689	0.89[ASN][1000 genomes]
rs6922298	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs7740997	0.91[ASN][1000 genomes]
rs7748412	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs7749832	0.91[ASN][1000 genomes]
rs7758139	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs7758288	0.87[ASN][1000 genomes]
rs7762460	0.91[ASN][1000 genomes]
rs7770114	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs7770134	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs7770728	0.89[ASN][1000 genomes]
rs7772154	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs7775855	0.91[ASN][1000 genomes]
rs9321320	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs9483384	1.00[JPT][hapmap]
rs9493173	0.91[ASN][1000 genomes]
rs9493175	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs9493179	1.00[JPT][hapmap]
rs9493181	1.00[JPT][hapmap]
rs969522	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv427768	chr6:132300468-132398477	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	esv3491956	chr6:132373959-132380057	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	esv3491953	chr6:132374434-132379932	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	esv3491957	chr6:132374521-132379465	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	esv3474263	chr6:132375031-132379054	Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
6	esv3474264	chr6:132375072-132379038	Weak transcription ZNF genes & repeats Enhancers	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
7	esv3491955	chr6:132375078-132379063	Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
8	esv3491954	chr6:132375112-132379027	Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
9	esv3491950	chr6:132375118-132378983	Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
10	esv3491958	chr6:132375118-132378983	ZNF genes & repeats Weak transcription Enhancers	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
11	esv3474265	chr6:132375195-132378902	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
12	esv9824	chr6:132375570-132378995	Enhancers ZNF genes & repeats Weak transcription	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:132375000-132384800	Weak transcription	Pancreas	Pancrea
2	chr6:132376200-132378200	Weak transcription	NHDF-Ad	bronchial
3	chr6:132376200-132379200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr6:132376200-132379400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr6:132376200-132379400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr6:132376200-132379400	Weak transcription	Osteobl	bone
7	chr6:132376200-132380600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr6:132376400-132378000	Weak transcription	Muscle Satellite Cultured Cells	--
9	chr6:132376600-132380200	Weak transcription	NHLF	lung
10	chr6:132376600-132384400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr6:132377400-132379800	Weak transcription	Primary hematopoietic stem cells	blood

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