Variant report
Variant | rs1206727 |
---|---|
Chromosome Location | chr6:132361359-132361360 |
allele | A/G |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
(count:1 , 50 per page) page:
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No. | Distal block | Cell Line | Cell type | Cell Stage |
---|---|---|---|---|
1 | 6:132269655-132282174..6:132361011-132363385 | Hela-S3 | cervix: |
No data |
No data |
No data |
Variant related genes | Relation type |
---|---|
ENSG00000227220 | Chromatin interaction |
ENSG00000118523 | Chromatin interaction |
rs_ID | r2[population] |
---|---|
rs1206728 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs2327194 | 0.89[ASN][1000 genomes] |
rs233917 | 0.81[EUR][1000 genomes] |
rs233919 | 0.80[EUR][1000 genomes] |
rs6914252 | 0.80[AMR][1000 genomes];0.81[EUR][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv886673 | chr6:132299748-132363507 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS | Chromatin interactive region | 4 gene(s) | inside rSNPs | diseases |
2 | nsv427768 | chr6:132300468-132398477 | Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS | Chromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
No data |