Variant report

Variant	rs2327194
Chromosome Location	chr6:132373986-132373987
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs1206727	0.89[ASN][1000 genomes]
rs1206728	0.89[ASN][1000 genomes]
rs12197826	1.00[YRI][hapmap]
rs1569448	0.80[JPT][hapmap]
rs2223258	0.95[YRI][hapmap]
rs35599250	0.85[EUR][1000 genomes]
rs9483376	0.91[YRI][hapmap]
rs9493173	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv427768	chr6:132300468-132398477	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	esv3491956	chr6:132373959-132380057	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs2327194	LOC285735	cis	parietal	SCAN

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:132373200-132376400	Enhancers	Muscle Satellite Cultured Cells	--
2	chr6:132373600-132376200	Enhancers	NHDF-Ad	bronchial
3	chr6:132373800-132374000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr6:132373800-132376200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr6:132373800-132376600	Enhancers	NHLF	lung

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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