Variant report

Variant	rs12197826
Chromosome Location	chr6:132376802-132376803
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	6:132269655-132282174..6:132373869-132383497	GM12878	blood:
2	6:132176847-132180372..6:132373869-132383497	K562	blood:
3	6:132182612-132191683..6:132373869-132383497	Hela-S3	cervix:

Variant related genes	Relation type
ENSG00000197594	Chromatin interaction
ENSG00000227220	Chromatin interaction
ENSG00000118523	Chromatin interaction

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10457579	0.87[ASN][1000 genomes]
rs11154656	0.87[JPT][hapmap]
rs1206738	0.96[ASN][1000 genomes]
rs1206739	0.96[ASN][1000 genomes]
rs12193041	0.87[CHB][hapmap];0.88[JPT][hapmap]
rs2022391	0.85[CHB][hapmap];0.90[JPT][hapmap]
rs2223258	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2327194	1.00[YRI][hapmap]
rs2327195	0.97[ASN][1000 genomes]
rs2327196	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs233928	0.90[CHB][hapmap];0.82[CHD][hapmap];0.90[JPT][hapmap]
rs233929	0.90[CHB][hapmap];0.82[CHD][hapmap];0.90[JPT][hapmap]
rs233930	0.89[CHB][hapmap];1.00[JPT][hapmap]
rs233931	0.94[CHB][hapmap];1.00[JPT][hapmap]
rs233932	0.90[CHB][hapmap];1.00[JPT][hapmap]
rs6900348	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs6903186	0.95[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs7356961	0.90[CHB][hapmap];0.88[CHD][hapmap];1.00[JPT][hapmap];0.82[TSI][hapmap]
rs7357002	0.90[CHB][hapmap];0.90[JPT][hapmap]
rs737454	0.95[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];0.85[TSI][hapmap];0.86[ASN][1000 genomes]
rs9321318	0.91[ASN][1000 genomes]
rs9373010	0.95[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];0.87[TSI][hapmap];0.95[ASN][1000 genomes]
rs9373011	1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.85[TSI][hapmap];0.95[ASN][1000 genomes]
rs9388965	0.88[ASN][1000 genomes]
rs9399007	0.90[CHB][hapmap];1.00[JPT][hapmap]
rs9402383	0.90[CHB][hapmap];0.89[JPT][hapmap]
rs9483372	0.89[CHB][hapmap];0.82[CHD][hapmap];0.89[JPT][hapmap];0.82[TSI][hapmap]
rs9483376	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9483377	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.92[LWK][hapmap];1.00[MEX][hapmap];0.92[MKK][hapmap];1.00[TSI][hapmap];0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:14 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv427768	chr6:132300468-132398477	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	esv3491956	chr6:132373959-132380057	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	esv3491953	chr6:132374434-132379932	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	esv3491957	chr6:132374521-132379465	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	esv3474263	chr6:132375031-132379054	Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
6	esv3474264	chr6:132375072-132379038	Weak transcription ZNF genes & repeats Enhancers	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
7	esv3491955	chr6:132375078-132379063	Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
8	esv3491954	chr6:132375112-132379027	Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
9	esv3491950	chr6:132375118-132378983	Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
10	esv3491958	chr6:132375118-132378983	ZNF genes & repeats Weak transcription Enhancers	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
11	esv3512337	chr6:132375159-132376956	Enhancers Weak transcription	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
12	esv3512338	chr6:132375159-132376956	Enhancers Weak transcription	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
13	esv3474265	chr6:132375195-132378902	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
14	esv9824	chr6:132375570-132378995	Enhancers ZNF genes & repeats Weak transcription	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:132375000-132384800	Weak transcription	Pancreas	Pancrea
2	chr6:132376200-132378200	Weak transcription	NHDF-Ad	bronchial
3	chr6:132376200-132379200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr6:132376200-132379400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr6:132376200-132379400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr6:132376200-132379400	Weak transcription	Osteobl	bone
7	chr6:132376200-132380600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr6:132376400-132378000	Weak transcription	Muscle Satellite Cultured Cells	--
9	chr6:132376600-132380200	Weak transcription	NHLF	lung
10	chr6:132376600-132384400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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