Variant report

Variant	rs9388965
Chromosome Location	chr6:132405223-132405224
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	6:132269655-132282174..6:132402790-132406656	H1-hESC	embryonic stem cell:	embryo

Variant related genes	Relation type
ENSG00000227220	Chromatin interaction
ENSG00000118523	Chromatin interaction

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10457579	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1206738	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1206739	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12193041	0.91[EUR][1000 genomes]
rs12197826	0.88[ASN][1000 genomes]
rs12212906	0.89[EUR][1000 genomes]
rs12214663	0.89[EUR][1000 genomes]
rs12214716	0.84[EUR][1000 genomes]
rs2223258	0.86[ASN][1000 genomes]
rs2327195	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2327196	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4349833	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6900348	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6903186	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7356961	0.90[EUR][1000 genomes]
rs7357002	0.90[EUR][1000 genomes]
rs737454	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7742135	0.90[EUR][1000 genomes]
rs9321318	0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9373007	0.91[EUR][1000 genomes]
rs9373010	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9373011	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9385593	0.90[EUR][1000 genomes]
rs9399007	0.90[EUR][1000 genomes]
rs9402383	0.86[EUR][1000 genomes]
rs9483372	0.90[EUR][1000 genomes]
rs9483376	0.89[ASN][1000 genomes]
rs9483377	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2762616	chr6:132404708-132584324	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:132392000-132405400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr6:132396000-132406200	Weak transcription	Aorta	Aorta
3	chr6:132402400-132406400	Weak transcription	Ovary	ovary
4	chr6:132403000-132406000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr6:132403400-132406200	Enhancers	HUVEC	blood vessel
6	chr6:132403400-132406400	Enhancers	Muscle Satellite Cultured Cells	--
7	chr6:132403800-132406200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr6:132404000-132405400	Weak transcription	NHDF-Ad	bronchial
9	chr6:132404000-132405800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr6:132404000-132406400	Enhancers	HSMMtube	muscle
11	chr6:132404000-132406400	Enhancers	Osteobl	bone
12	chr6:132404000-132410400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr6:132404200-132406200	Enhancers	Fetal Heart	heart
14	chr6:132404600-132406200	Enhancers	NH-A	brain
15	chr6:132404600-132407600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr6:132405000-132406200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr6:132405000-132406600	Enhancers	NHLF	lung
18	chr6:132405000-132407000	Enhancers	HMEC	breast
19	chr6:132405000-132407200	Enhancers	Placenta	Placenta
20	chr6:132405000-132407600	Enhancers	NHEK	skin
21	chr6:132405000-132408400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
22	chr6:132405200-132405400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
23	chr6:132405200-132406200	Enhancers	HSMM	muscle
24	chr6:132405200-132407200	Enhancers	Breast Myoepithelial Primary Cells	Breast

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