Variant report

Variant	rs12193041
Chromosome Location	chr6:132338996-132338997
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	6:132269655-132282174..6:132337728-132339611	H1-hESC	embryonic stem cell:	embryo

Variant related genes	Relation type
ENSG00000118523	Chromatin interaction
ENSG00000227220	Chromatin interaction

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs1011555	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10457579	0.92[EUR][1000 genomes]
rs11154656	0.87[CHB][hapmap];0.82[JPT][hapmap]
rs1206738	0.94[EUR][1000 genomes]
rs1206739	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12197826	0.87[CHB][hapmap];0.88[JPT][hapmap]
rs12202729	0.88[CHB][hapmap]
rs12212906	0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12214274	0.89[CHB][hapmap]
rs12214663	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12214716	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2022390	0.90[ASN][1000 genomes]
rs2022391	0.94[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs2223258	0.88[CHB][hapmap];0.88[JPT][hapmap]
rs2327195	0.94[EUR][1000 genomes]
rs2327196	0.87[CEU][hapmap];0.87[CHB][hapmap];0.88[JPT][hapmap];0.92[EUR][1000 genomes]
rs233928	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs233929	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs233930	1.00[CHB][hapmap];0.88[JPT][hapmap];0.95[ASN][1000 genomes]
rs233931	1.00[CHB][hapmap];0.88[JPT][hapmap];0.95[ASN][1000 genomes]
rs233932	1.00[CHB][hapmap];0.88[JPT][hapmap];0.95[ASN][1000 genomes]
rs4349833	0.90[EUR][1000 genomes]
rs576718	0.95[ASN][1000 genomes]
rs6900348	0.93[CEU][hapmap];0.88[CHB][hapmap];0.88[JPT][hapmap];0.93[EUR][1000 genomes]
rs6903186	0.93[CEU][hapmap];0.82[CHB][hapmap];0.88[JPT][hapmap];0.92[EUR][1000 genomes]
rs7356961	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.81[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7357002	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs737454	0.93[CEU][hapmap];0.80[CHB][hapmap];0.88[JPT][hapmap];0.89[EUR][1000 genomes]
rs7742135	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9321318	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9373006	0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9373007	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9373010	0.93[CEU][hapmap];0.81[CHB][hapmap];0.88[JPT][hapmap];0.94[EUR][1000 genomes]
rs9373011	0.93[CEU][hapmap];0.87[CHB][hapmap];0.88[JPT][hapmap];0.93[EUR][1000 genomes]
rs9375854	0.88[CHB][hapmap]
rs9385593	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9388957	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9388965	0.91[EUR][1000 genomes]
rs9399006	0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9399007	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9402380	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9402381	0.90[ASN][1000 genomes]
rs9402382	0.90[ASN][1000 genomes]
rs9402383	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9483372	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9483376	0.88[CHB][hapmap];0.88[JPT][hapmap]
rs9483377	0.87[CHB][hapmap];0.88[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv470861	chr6:132291785-132351866	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
2	nsv886672	chr6:132299748-132349215	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
3	nsv886673	chr6:132299748-132363507	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
4	nsv427768	chr6:132300468-132398477	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:132337400-132339200	Weak transcription	NHDF-Ad	bronchial
2	chr6:132338000-132340800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr6:132338400-132340800	Weak transcription	HSMM	muscle

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