Variant report

Variant	rs9373010
Chromosome Location	chr6:132383953-132383954
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	6:132269655-132282174..6:132383497-132384441	H1-hESC	embryonic stem cell:	embryo

Variant related genes	Relation type
ENSG00000227220	Chromatin interaction
ENSG00000118523	Chromatin interaction

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10457579	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11154656	0.87[JPT][hapmap]
rs1206738	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1206739	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12193041	0.93[CEU][hapmap];0.81[CHB][hapmap];0.88[JPT][hapmap];0.94[EUR][1000 genomes]
rs12197826	0.95[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];0.87[TSI][hapmap];0.95[ASN][1000 genomes]
rs12202729	0.83[TSI][hapmap]
rs12212906	0.92[EUR][1000 genomes]
rs12214663	0.92[EUR][1000 genomes]
rs12214716	0.87[EUR][1000 genomes]
rs2022391	0.90[JPT][hapmap]
rs2223258	0.95[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs2327195	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2327196	0.82[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs233928	0.85[CHB][hapmap];0.80[CHD][hapmap];0.90[JPT][hapmap]
rs233929	0.85[CHB][hapmap];0.80[CHD][hapmap];0.90[JPT][hapmap]
rs233930	0.84[CHB][hapmap];1.00[JPT][hapmap]
rs233931	0.94[CHB][hapmap];1.00[JPT][hapmap]
rs233932	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs4349833	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6900348	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6903186	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7356961	0.94[CEU][hapmap];0.85[CHB][hapmap];0.86[CHD][hapmap];1.00[JPT][hapmap];0.89[TSI][hapmap];0.93[EUR][1000 genomes]
rs7357002	0.94[CEU][hapmap];0.85[CHB][hapmap];0.90[JPT][hapmap];0.93[EUR][1000 genomes]
rs737454	1.00[ASW][hapmap];1.00[CEU][hapmap];0.90[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];0.97[TSI][hapmap];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7742135	0.93[EUR][1000 genomes]
rs9321318	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9373007	0.94[EUR][1000 genomes]
rs9373011	1.00[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];0.98[CHD][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];0.84[MKK][hapmap];0.97[TSI][hapmap];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9375854	0.80[TSI][hapmap]
rs9385593	0.93[EUR][1000 genomes]
rs9388965	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9399007	0.94[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes]
rs9402383	0.88[CEU][hapmap];0.85[CHB][hapmap];0.89[JPT][hapmap];0.86[TSI][hapmap];0.89[EUR][1000 genomes]
rs9483372	0.94[CEU][hapmap];0.84[CHB][hapmap];0.80[CHD][hapmap];0.89[JPT][hapmap];0.89[TSI][hapmap];0.93[EUR][1000 genomes]
rs9483376	0.95[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs9483377	0.95[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];0.87[TSI][hapmap];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv427768	chr6:132300468-132398477	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:132375000-132384800	Weak transcription	Pancreas	Pancrea
2	chr6:132376600-132384400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr6:132379200-132385600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr6:132379200-132386200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr6:132379400-132385600	Enhancers	NHDF-Ad	bronchial
6	chr6:132379600-132386200	Enhancers	Muscle Satellite Cultured Cells	--
7	chr6:132379800-132384400	Weak transcription	Fetal Heart	heart
8	chr6:132380800-132384400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr6:132381000-132384000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr6:132381400-132384200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr6:132381400-132386800	Enhancers	NH-A	brain
12	chr6:132381800-132387000	Enhancers	HSMM	muscle
13	chr6:132382000-132384200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
14	chr6:132382200-132384400	Weak transcription	Rectal Smooth Muscle	rectum
15	chr6:132382400-132384400	Weak transcription	HepG2	liver
16	chr6:132382400-132384800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
17	chr6:132382400-132385200	Enhancers	NHLF	lung
18	chr6:132382600-132384000	Weak transcription	HMEC	breast
19	chr6:132382600-132385200	Enhancers	Ovary	ovary
20	chr6:132383200-132384000	Weak transcription	Brain Anterior Caudate	brain
21	chr6:132383200-132384200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
22	chr6:132383200-132384200	Weak transcription	HSMMtube	muscle
23	chr6:132383200-132384400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr6:132383200-132384400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
25	chr6:132383400-132384400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
26	chr6:132383400-132384800	Weak transcription	Brain Hippocampus Middle	brain
27	chr6:132383600-132385200	Enhancers	Aorta	Aorta
28	chr6:132383800-132384400	Flanking Active TSS	HUVEC	blood vessel
29	chr6:132383800-132384600	Enhancers	Fetal Muscle Leg	muscle
30	chr6:132383800-132385600	Enhancers	A549	lung
31	chr6:132383800-132385800	Enhancers	Osteobl	bone
32	chr6:132383800-132386200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links