Variant report

Variant	rs7356961
Chromosome Location	chr6:132349215-132349216
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	6:132269655-132282174..6:132349036-132358071	K562	blood:

Variant related genes	Relation type
ENSG00000118523	Chromatin interaction
ENSG00000227220	Chromatin interaction

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs1011555	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10457579	0.90[EUR][1000 genomes]
rs11154656	0.88[CHB][hapmap];0.87[JPT][hapmap]
rs1206738	0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1206739	0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12193041	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.81[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12197826	0.90[CHB][hapmap];0.88[CHD][hapmap];1.00[JPT][hapmap];0.82[TSI][hapmap]
rs12202729	0.86[CHB][hapmap];0.83[GIH][hapmap];0.83[TSI][hapmap]
rs12212906	0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12214274	0.85[CHB][hapmap]
rs12214663	0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12214716	0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2022390	0.83[ASN][1000 genomes]
rs2022391	0.95[CHB][hapmap];0.90[JPT][hapmap];0.83[ASN][1000 genomes]
rs2223258	0.90[CHB][hapmap];1.00[JPT][hapmap]
rs2327195	0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2327196	0.89[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes]
rs233928	1.00[CHB][hapmap];0.93[CHD][hapmap];0.90[JPT][hapmap];0.93[ASN][1000 genomes]
rs233929	0.93[ASW][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];0.90[JPT][hapmap];0.97[LWK][hapmap];0.92[MKK][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs233930	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs233931	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs233932	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs4349833	0.89[EUR][1000 genomes]
rs576718	0.97[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs6900348	0.94[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes]
rs6903186	0.94[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes]
rs7357002	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs737454	0.94[CEU][hapmap];0.85[CHB][hapmap];0.86[CHD][hapmap];1.00[JPT][hapmap];0.86[TSI][hapmap];0.88[EUR][1000 genomes]
rs7742135	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7747551	0.81[TSI][hapmap]
rs9321318	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9373006	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9373007	0.81[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9373010	0.94[CEU][hapmap];0.85[CHB][hapmap];0.86[CHD][hapmap];1.00[JPT][hapmap];0.89[TSI][hapmap];0.93[EUR][1000 genomes]
rs9373011	0.94[CEU][hapmap];0.90[CHB][hapmap];0.88[CHD][hapmap];1.00[JPT][hapmap];0.86[TSI][hapmap];0.92[EUR][1000 genomes]
rs9375854	0.86[CHB][hapmap]
rs9385593	0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9388957	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9388965	0.90[EUR][1000 genomes]
rs9399006	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9399007	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9402380	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9402381	0.83[ASN][1000 genomes]
rs9402382	0.83[ASN][1000 genomes]
rs9402383	0.94[CEU][hapmap];1.00[CHB][hapmap];0.91[CHD][hapmap];0.90[GIH][hapmap];0.89[JPT][hapmap];0.92[TSI][hapmap];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9483372	0.87[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];0.97[GIH][hapmap];0.89[JPT][hapmap];0.84[LWK][hapmap];0.81[MEX][hapmap];0.94[MKK][hapmap];1.00[TSI][hapmap];0.91[YRI][hapmap];0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9483376	0.90[CHB][hapmap];1.00[JPT][hapmap]
rs9483377	0.90[CHB][hapmap];0.88[CHD][hapmap];1.00[JPT][hapmap];0.82[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv470861	chr6:132291785-132351866	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
2	nsv886672	chr6:132299748-132349215	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
3	nsv886673	chr6:132299748-132363507	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
4	nsv427768	chr6:132300468-132398477	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:132348400-132349400	Enhancers	ES-WA7 Cell Line	embryonic stem cell
2	chr6:132349000-132349400	Enhancers	HUES64 Cell Line	embryonic stem cell
3	chr6:132349200-132349400	Enhancers	HUES48 Cell Line	embryonic stem cell
4	chr6:132349200-132349400	Enhancers	HUES6 Cell Line	embryonic stem cell

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