Variant report

Variant	rs1206738
Chromosome Location	chr6:132368241-132368242
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10457579	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11154656	0.87[JPT][hapmap]
rs1206739	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12193041	0.93[CEU][hapmap];0.87[CHB][hapmap];0.88[JPT][hapmap];0.94[EUR][1000 genomes]
rs12197826	1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[JPT][hapmap];0.87[TSI][hapmap];0.96[ASN][1000 genomes]
rs12202729	0.87[ASW][hapmap];0.83[TSI][hapmap]
rs12212906	0.92[EUR][1000 genomes]
rs12214663	0.92[EUR][1000 genomes]
rs12214716	0.87[EUR][1000 genomes]
rs2022391	0.85[CHB][hapmap];0.90[JPT][hapmap]
rs2223258	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs2327195	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2327196	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs233928	0.90[CHB][hapmap];0.84[CHD][hapmap];0.90[JPT][hapmap]
rs233929	0.90[CHB][hapmap];0.84[CHD][hapmap];0.90[JPT][hapmap]
rs233930	0.89[CHB][hapmap];1.00[JPT][hapmap]
rs233931	0.94[CHB][hapmap];1.00[JPT][hapmap]
rs233932	0.90[CHB][hapmap];1.00[JPT][hapmap]
rs4349833	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6900348	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6903186	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7356961	0.94[CEU][hapmap];0.90[CHB][hapmap];0.91[CHD][hapmap];1.00[JPT][hapmap];0.89[TSI][hapmap];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7357002	0.94[CEU][hapmap];0.90[CHB][hapmap];0.90[JPT][hapmap];0.93[EUR][1000 genomes]
rs737454	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];0.97[TSI][hapmap];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7742135	0.93[EUR][1000 genomes]
rs9321318	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9373007	0.94[EUR][1000 genomes]
rs9373010	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.84[MKK][hapmap];1.00[TSI][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9373011	1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];0.97[TSI][hapmap];0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9375854	0.87[ASW][hapmap]
rs9385593	0.93[EUR][1000 genomes]
rs9388965	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9399007	0.94[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes]
rs9402383	0.88[CEU][hapmap];0.90[CHB][hapmap];0.81[CHD][hapmap];0.89[JPT][hapmap];0.86[TSI][hapmap];0.89[EUR][1000 genomes]
rs9483372	0.94[CEU][hapmap];0.89[CHB][hapmap];0.84[CHD][hapmap];0.89[JPT][hapmap];0.89[TSI][hapmap];0.93[EUR][1000 genomes]
rs9483376	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs9483377	1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[JPT][hapmap];0.87[TSI][hapmap];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv427768	chr6:132300468-132398477	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:132367400-132368600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr6:132367400-132368800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr6:132367600-132368400	Enhancers	Aorta	Aorta
4	chr6:132368000-132368600	Enhancers	Breast Myoepithelial Primary Cells	Breast

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links