Variant report

Variant	rs7742135
Chromosome Location	chr6:132340824-132340825
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs1011555	0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10457579	0.90[EUR][1000 genomes]
rs11154656	0.88[CHB][hapmap];0.88[JPT][hapmap]
rs1206738	0.93[EUR][1000 genomes]
rs1206739	0.93[EUR][1000 genomes]
rs12193041	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12197826	0.90[CHB][hapmap];0.82[CHD][hapmap];0.90[JPT][hapmap];0.82[TSI][hapmap]
rs12202729	0.86[CHB][hapmap];0.81[CHD][hapmap];0.83[GIH][hapmap];0.83[TSI][hapmap]
rs12212906	0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12214274	0.85[CHB][hapmap]
rs12214663	0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12214716	0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2022390	0.90[ASN][1000 genomes]
rs2022391	0.95[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs2223258	0.90[CHB][hapmap];0.90[JPT][hapmap]
rs2327195	0.93[EUR][1000 genomes]
rs2327196	0.89[CHB][hapmap];0.90[JPT][hapmap];0.91[EUR][1000 genomes]
rs233928	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.94[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs233929	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs233930	1.00[CHB][hapmap];0.89[JPT][hapmap];0.95[ASN][1000 genomes]
rs233931	1.00[CHB][hapmap];0.89[JPT][hapmap];0.95[ASN][1000 genomes]
rs233932	1.00[CHB][hapmap];0.90[JPT][hapmap];0.95[ASN][1000 genomes]
rs4349833	0.89[EUR][1000 genomes]
rs576718	0.95[ASN][1000 genomes]
rs6900348	0.94[CEU][hapmap];0.90[CHB][hapmap];0.90[JPT][hapmap];0.92[EUR][1000 genomes]
rs6903186	0.94[CEU][hapmap];0.85[CHB][hapmap];0.90[JPT][hapmap];0.90[EUR][1000 genomes]
rs7356961	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[GIH][hapmap];0.90[JPT][hapmap];0.88[MEX][hapmap];0.81[MKK][hapmap];1.00[TSI][hapmap];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7357002	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs737454	0.94[CEU][hapmap];0.85[CHB][hapmap];0.90[JPT][hapmap];0.86[TSI][hapmap];0.88[EUR][1000 genomes]
rs7747551	0.81[TSI][hapmap]
rs9321318	0.96[EUR][1000 genomes]
rs9373006	0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9373007	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9373010	0.94[CEU][hapmap];0.85[CHB][hapmap];0.80[CHD][hapmap];0.90[JPT][hapmap];0.89[TSI][hapmap];0.93[EUR][1000 genomes]
rs9373011	0.94[CEU][hapmap];0.90[CHB][hapmap];0.82[CHD][hapmap];0.90[JPT][hapmap];0.86[TSI][hapmap];0.92[EUR][1000 genomes]
rs9375854	0.86[CHB][hapmap]
rs9385593	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9388957	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9388965	0.90[EUR][1000 genomes]
rs9399006	0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9399007	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.81[YRI][hapmap];0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9402380	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9402381	0.90[ASN][1000 genomes]
rs9402382	0.90[ASN][1000 genomes]
rs9402383	0.94[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.92[TSI][hapmap];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9483372	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];1.00[TSI][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9483376	0.90[CHB][hapmap];0.90[JPT][hapmap]
rs9483377	0.90[CHB][hapmap];0.82[CHD][hapmap];0.90[JPT][hapmap];0.82[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv470861	chr6:132291785-132351866	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
2	nsv886672	chr6:132299748-132349215	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
3	nsv886673	chr6:132299748-132363507	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
4	nsv427768	chr6:132300468-132398477	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:132340200-132341000	Enhancers	Fetal Kidney	kidney
2	chr6:132340200-132341400	Weak transcription	NHDF-Ad	bronchial
3	chr6:132340200-132346800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr6:132340600-132341800	Enhancers	Primary B cells from cord blood	blood
5	chr6:132340600-132344000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr6:132340800-132341200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr6:132340800-132341200	Enhancers	Stomach Smooth Muscle	stomach
8	chr6:132340800-132341400	Enhancers	HSMM	muscle
9	chr6:132340800-132341600	Enhancers	Brain Substantia Nigra	brain
10	chr6:132340800-132341800	Enhancers	Rectal Smooth Muscle	rectum
11	chr6:132340800-132343400	Enhancers	Colon Smooth Muscle	Colon
12	chr6:132340800-132343800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
13	chr6:132340800-132344600	Enhancers	Breast Myoepithelial Primary Cells	Breast
14	chr6:132340800-132345000	Enhancers	HepG2	liver

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