Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:132271245..132273331-chr6:132345025..132346642,2	MCF-7	breast:
2	6:132269655-132282174..6:132344161-132349036	H1-hESC	embryonic stem cell:	embryo
3	6:132182612-132191683..6:132344161-132349036	Hela-S3	cervix:

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs1011555	0.85[ASN][1000 genomes]
rs12193041	0.95[ASN][1000 genomes]
rs12212906	0.91[ASN][1000 genomes]
rs12214663	0.92[ASN][1000 genomes]
rs12214716	0.90[ASN][1000 genomes]
rs2022390	0.85[ASN][1000 genomes]
rs2022391	0.85[ASN][1000 genomes]
rs233928	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs233929	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs233930	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs233931	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs233932	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7356961	0.97[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs7357002	0.95[ASN][1000 genomes]
rs7742135	0.95[ASN][1000 genomes]
rs9321318	0.83[ASN][1000 genomes]
rs9373006	0.87[ASN][1000 genomes]
rs9373007	0.95[ASN][1000 genomes]
rs9385593	0.95[ASN][1000 genomes]
rs9388957	0.85[ASN][1000 genomes]
rs9399006	0.88[ASN][1000 genomes]
rs9399007	0.99[ASN][1000 genomes]
rs9402380	0.85[ASN][1000 genomes]
rs9402381	0.85[ASN][1000 genomes]
rs9402382	0.85[ASN][1000 genomes]
rs9402383	0.92[ASN][1000 genomes]
rs9483372	0.91[AFR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv470861	chr6:132291785-132351866	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
2	nsv886672	chr6:132299748-132349215	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
3	nsv886673	chr6:132299748-132363507	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
4	nsv427768	chr6:132300468-132398477	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:132340200-132346800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr6:132343400-132346600	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr6:132343600-132346600	Weak transcription	HUES6 Cell Line	embryonic stem cell
4	chr6:132343600-132346800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr6:132343600-132347200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr6:132343600-132348800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr6:132343800-132346600	Weak transcription	HUES64 Cell Line	embryonic stem cell
8	chr6:132344000-132346800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr6:132344600-132346800	Weak transcription	H9 Cell Line	embryonic stem cell
10	chr6:132344800-132346400	Weak transcription	HUES48 Cell Line	embryonic stem cell
11	chr6:132344800-132346600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr6:132344800-132346600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
13	chr6:132345000-132346400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
14	chr6:132345000-132347200	Weak transcription	HepG2	liver
15	chr6:132345200-132346400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
16	chr6:132345200-132346800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell

Quick Search: