Variant report

Variant	rs12212906
Chromosome Location	chr6:132330121-132330122
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs1011555	0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10457579	0.90[EUR][1000 genomes]
rs11154656	0.94[CHB][hapmap];0.83[JPT][hapmap];0.80[AMR][1000 genomes]
rs1206738	0.92[EUR][1000 genomes]
rs1206739	0.92[EUR][1000 genomes]
rs12193041	0.87[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12197826	0.85[CHB][hapmap];0.90[JPT][hapmap]
rs12202729	0.90[CHB][hapmap];0.80[AMR][1000 genomes]
rs12214274	0.91[CHB][hapmap];0.80[AMR][1000 genomes]
rs12214663	0.98[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12214716	0.97[AFR][1000 genomes];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2022390	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2022391	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2223258	0.85[CHB][hapmap];0.90[JPT][hapmap]
rs2327195	0.92[EUR][1000 genomes]
rs2327196	0.85[CHB][hapmap];0.90[JPT][hapmap];0.90[EUR][1000 genomes]
rs233928	0.95[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs233929	0.95[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs233930	0.95[CHB][hapmap];0.90[JPT][hapmap];0.91[ASN][1000 genomes]
rs233931	0.94[CHB][hapmap];0.90[JPT][hapmap];0.91[ASN][1000 genomes]
rs233932	0.95[CHB][hapmap];0.90[JPT][hapmap];0.91[ASN][1000 genomes]
rs4349833	0.88[EUR][1000 genomes]
rs576718	0.91[ASN][1000 genomes]
rs6900348	0.83[CEU][hapmap];0.86[CHB][hapmap];0.90[JPT][hapmap];0.92[EUR][1000 genomes]
rs6903186	0.83[CEU][hapmap];0.81[CHB][hapmap];0.90[JPT][hapmap];0.90[EUR][1000 genomes]
rs7356961	0.89[CEU][hapmap];0.95[CHB][hapmap];0.90[JPT][hapmap];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7357002	0.89[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs737454	0.83[CEU][hapmap];0.80[CHB][hapmap];0.90[JPT][hapmap];0.87[EUR][1000 genomes]
rs7742135	0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9321318	0.95[EUR][1000 genomes]
rs9373005	0.80[AMR][1000 genomes]
rs9373006	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9373007	0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9373010	0.83[CEU][hapmap];0.80[CHB][hapmap];0.90[JPT][hapmap];0.92[EUR][1000 genomes]
rs9373011	0.83[CEU][hapmap];0.85[CHB][hapmap];0.90[JPT][hapmap];0.92[EUR][1000 genomes]
rs9375854	0.90[CHB][hapmap];0.80[AMR][1000 genomes]
rs9385593	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9388957	0.93[AFR][1000 genomes];0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9388965	0.89[EUR][1000 genomes]
rs9399006	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9399007	0.89[CEU][hapmap];0.95[CHB][hapmap];0.90[JPT][hapmap];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9402380	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9402381	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9402382	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9402383	0.94[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9483372	0.89[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9483376	0.86[CHB][hapmap];0.90[JPT][hapmap]
rs9483377	0.85[CHB][hapmap];0.90[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv470861	chr6:132291785-132351866	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
2	nsv886672	chr6:132299748-132349215	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
3	nsv886673	chr6:132299748-132363507	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
4	nsv427768	chr6:132300468-132398477	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:132326000-132330400	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr6:132326800-132332000	Weak transcription	Aorta	Aorta
3	chr6:132327000-132330800	Weak transcription	Stomach Mucosa	stomach
4	chr6:132329200-132330400	Weak transcription	HepG2	liver
5	chr6:132329200-132332800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr6:132329200-132332800	Weak transcription	Osteobl	bone
7	chr6:132329400-132330400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr6:132329400-132331200	Weak transcription	Colon Smooth Muscle	Colon
9	chr6:132329400-132332200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr6:132329400-132332400	Weak transcription	NHDF-Ad	bronchial
11	chr6:132330000-132330800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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