Variant report

Variant	esv9824
Chromosome Location	chr6:132375570-132378995
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	6:132269655-132282174..6:132373869-132383497	GM12878	blood:
2	6:132182612-132191683..6:132373869-132383497	Hela-S3	cervix:
3	6:132176847-132180372..6:132373869-132383497	K562	blood:

Variant related genes	Relation type
ENSG00000227220	chromatin interactions
ENSG00000118523	chromatin interactions
ENSG00000197594	chromatin interactions

Extended variants
information (count: 112 )
Associated
traits (count: 80 )

Variant overlapped rSNPs/rCNVs (count:112 , 50 per page) page: 1 2 3

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs574552059	chr6:132375622-132375623	Enhancers Weak transcription	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
2	rs372537951	chr6:132375665-132375666	Enhancers Weak transcription	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
3	rs529416618	chr6:132375712-132375713	Enhancers Weak transcription	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
4	rs150873886	chr6:132375715-132375716	Enhancers Weak transcription	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
5	rs551093625	chr6:132375730-132375731	Enhancers Weak transcription	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
6	rs560088865	chr6:132375734-132375735	Enhancers Weak transcription	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
7	rs527619965	chr6:132375748-132375749	Enhancers Weak transcription	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
8	rs546065219	chr6:132375768-132375769	Enhancers Weak transcription	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
9	rs569248667	chr6:132375790-132375791	Enhancers Weak transcription	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
10	rs115176760	chr6:132375820-132375821	Enhancers Weak transcription	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
11	rs183198265	chr6:132375839-132375840	Enhancers Weak transcription	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
12	rs76727739	chr6:132375843-132375844	Enhancers Weak transcription	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
13	rs12209398	chr6:132375874-132375875	Enhancers Weak transcription	Chromatin interactive region	3 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
14	rs528960123	chr6:132375953-132375954	Enhancers Weak transcription	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
15	rs547437257	chr6:132375983-132375984	Enhancers Weak transcription	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
16	rs565657133	chr6:132375988-132375989	Enhancers Weak transcription	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
17	rs534258059	chr6:132375989-132375990	Enhancers Weak transcription	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
18	rs9493173	chr6:132376018-132376019	Enhancers Weak transcription	Chromatin interactive region	3 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
19	rs571011308	chr6:132376066-132376067	Enhancers Weak transcription	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
20	rs538443827	chr6:132376172-132376173	Enhancers Weak transcription	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
21	rs386705946	chr6:132376200-132376201	Enhancers Weak transcription	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
22	rs12209559	chr6:132376202-132376203	Weak transcription Enhancers	Chromatin interactive region	3 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
23	rs147313131	chr6:132376205-132376206	Weak transcription Enhancers	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
24	rs191998457	chr6:132376220-132376221	Weak transcription Enhancers	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
25	rs377406130	chr6:132376255-132376256	Weak transcription Enhancers	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
26	rs140980428	chr6:132376280-132376281	Weak transcription Enhancers	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
27	rs185234513	chr6:132376306-132376307	Weak transcription Enhancers	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
28	rs564406337	chr6:132376332-132376333	Weak transcription Enhancers	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
29	rs531464327	chr6:132376382-132376383	Weak transcription Enhancers	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
30	rs367782303	chr6:132376387-132376388	Weak transcription Enhancers	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
31	rs141030328	chr6:132376438-132376439	Weak transcription Enhancers	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
32	rs529026385	chr6:132376518-132376519	Weak transcription Enhancers	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
33	rs189735774	chr6:132376547-132376548	Weak transcription Enhancers	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
34	rs368682077	chr6:132376603-132376604	Weak transcription Enhancers	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
35	rs192717211	chr6:132376665-132376666	Weak transcription Enhancers	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
36	rs36091491	chr6:132376785-132376786	Weak transcription Enhancers	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
37	rs12197826	chr6:132376802-132376803	Weak transcription	Chromatin interactive region	3 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
38	rs35778683	chr6:132376807-132376808	Weak transcription	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
39	rs573344071	chr6:132376813-132376814	Weak transcription	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
40	rs551051121	chr6:132376814-132376815	Weak transcription	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
41	rs571139626	chr6:132376830-132376831	Weak transcription	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
42	rs377762363	chr6:132376852-132376853	Weak transcription	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
43	rs538129348	chr6:132376866-132376867	Weak transcription	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
44	rs375165523	chr6:132376890-132376891	Weak transcription	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
45	rs556369165	chr6:132376925-132376926	Weak transcription	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
46	rs543514559	chr6:132376988-132376989	Weak transcription	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
47	rs535595415	chr6:132377090-132377091	Weak transcription	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
48	rs371791650	chr6:132377181-132377182	Weak transcription	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
49	rs184287137	chr6:132377183-132377184	Weak transcription	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
50	rs145471524	chr6:132377279-132377280	Weak transcription	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a

Variant related diseases (count:80)

Disease	PMID	Source
Uveal melanoma	21693616	CNVD
Glioblastoma multiforme	21080181	CNVD
Biliary cancer	19435499	CNVD
Medulloblastoma	21979893	CNVD
Malaria	21533027	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Ewing''s sarcoma	17952124	CNVD
Autism	21448237	CNVD
Autism	22495311	CNVD
Biliary cancer	20360734	CNVD
Breast cancer	20360734	CNVD
Coronary artery disease	20360734	CNVD
Crohn''s disease	20360734	CNVD
Hypertension	20360734	CNVD
Rheumatoid arthritis	20360734	CNVD
Type 1 diabetes	20360734	CNVD
Type 2 diabetes	20360734	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Neuroblastoma	18923191	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Melanoma	18172304	CNVD
Cancer	21637783	CNVD
Colorectal cancer	16272173	CNVD
Gastric cancer	17908304	CNVD
lymphocytic leukemia	21291569	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Follicular lymphoma	19010834	CNVD
Non-small cell lung cancer	21044232	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	19960244	CNVD
Hepatocellular carcinoma	22174799	CNVD
Phyllodes tumor	17334353	CNVD
Breast cancer	16608533	CNVD
Non-small cell lung cancer	21385341	CNVD
Prostate cancer	16705090	CNVD
Adenoid cystic carcinoma	17372589	CNVD
Ependymoma	16718352	CNVD
High-proliferative meningiomas	17937814	CNVD
Intracranial tumor	16823260	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Breast cancer	16272173	CNVD
Prostate cancer	18632612	CNVD
Wilms tumour	21544195	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Glioma	21046410	CNVD
Primary central nervous system lymphoma	21088137	CNVD
Zellweger syndrome	21572526	CNVD
Follicular lymphoma	20505157	CNVD
Congenital diaphragmatic hernia	21085971	CNVD
Malignant melanoma	18718029	CNVD
Lung adenocarcinoma	21935476	CNVD
Invasive pancreatic ductal carcinoma	16982739	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Lung cancer	18438408	CNVD
Breast cancer	21858162	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Breast cancer	17603634	CNVD
Chondromyxoid Fibroma	20696777	CNVD
Cancer	21183584	CNVD
Developmental delay	19490664	CNVD
Non-muscle invasive bladder neoplasm	19445696	CNVD
Burkitt''s lymphoma	18698080	CNVD
Breast cancer	21785460	CNVD
Kartagener syndrome	16639409	CNVD
Breast cancer	17133270	CNVD
Follicular lymphoma	18703704	CNVD
Neurodevelopmental disorder	22521361	CNVD
small cell lung cancer	20016488	CNVD
Adenoid cystic carcinoma	18698036	CNVD
head and neck squamous cell carcinoma	17671120	CNVD
Leukemia	18688285	CNVD
Breast cancer	21364760	CNVD
Myelofibrosis	22110671	CNVD
Renal cell carcinoma	18592004	CNVD
Acute lymphoblastic leukemia	18458336	CNVD
Non-syndromic sensorineural hearing loss	21293372	CNVD

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:132373200-132376400	Enhancers	Muscle Satellite Cultured Cells	--
2	chr6:132373600-132376200	Enhancers	NHDF-Ad	bronchial
3	chr6:132373800-132376200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr6:132373800-132376600	Enhancers	NHLF	lung
5	chr6:132374200-132376200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr6:132374400-132376200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr6:132374400-132376200	Enhancers	Osteobl	bone
8	chr6:132374400-132376800	Enhancers	HMEC	breast
9	chr6:132374600-132376200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr6:132374600-132376200	Enhancers	NH-A	brain
11	chr6:132375000-132384800	Weak transcription	Pancreas	Pancrea
12	chr6:132375200-132376200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr6:132375400-132376200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr6:132375400-132376400	Enhancers	NHEK	skin
15	chr6:132375400-132376600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr6:132375600-132376000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr6:132375600-132376000	Enhancers	HepG2	liver
18	chr6:132375600-132376200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr6:132375600-132376200	Enhancers	Hela-S3	cervix
20	chr6:132375800-132376200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr6:132375800-132376200	Enhancers	HSMM	muscle
22	chr6:132376200-132378200	Weak transcription	NHDF-Ad	bronchial
23	chr6:132376200-132379200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
24	chr6:132376200-132379400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr6:132376200-132379400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
26	chr6:132376200-132379400	Weak transcription	Osteobl	bone
27	chr6:132376200-132380600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
28	chr6:132376400-132378000	Weak transcription	Muscle Satellite Cultured Cells	--
29	chr6:132376600-132380200	Weak transcription	NHLF	lung
30	chr6:132376600-132384400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
31	chr6:132377400-132377800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
32	chr6:132377400-132379800	Weak transcription	Primary hematopoietic stem cells	blood
33	chr6:132378000-132378600	ZNF genes & repeats	Muscle Satellite Cultured Cells	--
34	chr6:132378200-132378600	ZNF genes & repeats	NHDF-Ad	bronchial
35	chr6:132378400-132378600	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived
36	chr6:132378400-132378600	ZNF genes & repeats	IMR90 fetal lung fibroblasts Cell Line	lung
37	chr6:132378600-132379200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
38	chr6:132378600-132379400	Weak transcription	NHDF-Ad	bronchial
39	chr6:132378600-132379600	Weak transcription	Muscle Satellite Cultured Cells	--
40	chr6:132378600-132381800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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