Variant report

Variant	rs12209559
Chromosome Location	chr6:132376202-132376203
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10457577	0.94[ASN][1000 genomes]
rs10457578	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs11154658	0.95[ASN][1000 genomes]
rs11154660	0.92[ASN][1000 genomes]
rs11154661	0.86[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs12202220	0.86[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs12209398	1.00[CEU][hapmap]
rs12527561	0.83[ASN][1000 genomes]
rs2327197	0.83[ASN][1000 genomes]
rs6914192	1.00[CEU][hapmap];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6916800	0.85[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs6929597	0.94[ASN][1000 genomes]
rs723071	0.83[ASN][1000 genomes]
rs72987800	0.94[ASN][1000 genomes]
rs7752454	0.87[ASN][1000 genomes]
rs7754913	0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:14 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv427768	chr6:132300468-132398477	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	esv3491956	chr6:132373959-132380057	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	esv3491953	chr6:132374434-132379932	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	esv3491957	chr6:132374521-132379465	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	esv3474263	chr6:132375031-132379054	Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
6	esv3474264	chr6:132375072-132379038	Weak transcription ZNF genes & repeats Enhancers	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
7	esv3491955	chr6:132375078-132379063	Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
8	esv3491954	chr6:132375112-132379027	Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
9	esv3491950	chr6:132375118-132378983	Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
10	esv3491958	chr6:132375118-132378983	ZNF genes & repeats Weak transcription Enhancers	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
11	esv3512337	chr6:132375159-132376956	Enhancers Weak transcription	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
12	esv3512338	chr6:132375159-132376956	Enhancers Weak transcription	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
13	esv3474265	chr6:132375195-132378902	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
14	esv9824	chr6:132375570-132378995	Enhancers ZNF genes & repeats Weak transcription	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:132373200-132376400	Enhancers	Muscle Satellite Cultured Cells	--
2	chr6:132373800-132376600	Enhancers	NHLF	lung
3	chr6:132374400-132376800	Enhancers	HMEC	breast
4	chr6:132375000-132384800	Weak transcription	Pancreas	Pancrea
5	chr6:132375400-132376400	Enhancers	NHEK	skin
6	chr6:132375400-132376600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr6:132376200-132378200	Weak transcription	NHDF-Ad	bronchial
8	chr6:132376200-132379200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr6:132376200-132379400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr6:132376200-132379400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr6:132376200-132379400	Weak transcription	Osteobl	bone
12	chr6:132376200-132380600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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