Variant report

Variant	rs7754913
Chromosome Location	chr6:132381855-132381856
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	6:132269655-132282174..6:132373869-132383497	GM12878	blood:
2	6:132176847-132180372..6:132373869-132383497	K562	blood:
3	6:132182612-132191683..6:132373869-132383497	Hela-S3	cervix:

Variant related genes	Relation type
ENSG00000118523	Chromatin interaction
ENSG00000197594	Chromatin interaction
ENSG00000227220	Chromatin interaction

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10457577	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11154658	1.00[CHB][hapmap];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11154660	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11154661	0.92[CEU][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];0.90[GIH][hapmap];0.88[JPT][hapmap];0.87[TSI][hapmap];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12200142	0.92[CHB][hapmap]
rs12202220	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.88[JPT][hapmap];0.91[TSI][hapmap];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12207504	0.85[CHB][hapmap]
rs12209559	0.94[ASN][1000 genomes]
rs12527561	0.89[ASN][1000 genomes]
rs2027035	0.85[CHB][hapmap]
rs2327197	0.89[ASN][1000 genomes]
rs233938	0.92[CHB][hapmap]
rs233940	0.92[CHB][hapmap]
rs6914192	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs6916800	0.92[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];0.90[GIH][hapmap];0.88[JPT][hapmap];0.91[TSI][hapmap];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6929597	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs723071	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72987800	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7752454	0.92[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv427768	chr6:132300468-132398477	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:132375000-132384800	Weak transcription	Pancreas	Pancrea
2	chr6:132376600-132384400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr6:132379200-132385600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr6:132379200-132386200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr6:132379400-132383400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr6:132379400-132385600	Enhancers	NHDF-Ad	bronchial
7	chr6:132379600-132386200	Enhancers	Muscle Satellite Cultured Cells	--
8	chr6:132379800-132383600	Enhancers	Brain Germinal Matrix	brain
9	chr6:132379800-132384400	Weak transcription	Fetal Heart	heart
10	chr6:132380200-132382000	Enhancers	NHLF	lung
11	chr6:132380200-132383800	Enhancers	HUVEC	blood vessel
12	chr6:132380400-132382000	Weak transcription	Colon Smooth Muscle	Colon
13	chr6:132380400-132382600	Weak transcription	Ovary	ovary
14	chr6:132380800-132384400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr6:132381000-132384000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr6:132381200-132382400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
17	chr6:132381200-132382600	Enhancers	Osteobl	bone
18	chr6:132381400-132382200	Enhancers	A549	lung
19	chr6:132381400-132382400	Enhancers	Fetal Intestine Large	intestine
20	chr6:132381400-132382600	Enhancers	Brain Anterior Caudate	brain
21	chr6:132381400-132384200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
22	chr6:132381400-132386800	Enhancers	NH-A	brain
23	chr6:132381600-132383200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
24	chr6:132381800-132382000	Enhancers	ES-I3 Cell Line	embryonic stem cell
25	chr6:132381800-132382000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
26	chr6:132381800-132382200	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
27	chr6:132381800-132382200	Enhancers	Rectal Smooth Muscle	rectum
28	chr6:132381800-132382400	Enhancers	Brain Substantia Nigra	brain
29	chr6:132381800-132382400	Enhancers	HepG2	liver
30	chr6:132381800-132382600	Enhancers	Brain Cingulate Gyrus	brain
31	chr6:132381800-132382600	Enhancers	Fetal Intestine Small	intestine
32	chr6:132381800-132382600	Enhancers	HSMMtube	muscle
33	chr6:132381800-132387000	Enhancers	HSMM	muscle

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