Variant report
| Variant | rs12207504 |
|---|---|
| Chromosome Location | chr6:132351866-132351867 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | 6:132269655-132282174..6:132349036-132358071 | K562 | blood: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000227220 | Chromatin interaction |
| ENSG00000118523 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:17)
| rs_ID | r2[population] |
|---|---|
| rs11154658 | 0.85[CHB][hapmap] |
| rs11154660 | 0.85[CHB][hapmap] |
| rs11154661 | 0.85[CHB][hapmap] |
| rs12200142 | 1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.81[AMR][1000 genomes];0.92[ASN][1000 genomes] |
| rs12202220 | 0.84[CHB][hapmap] |
| rs13212375 | 0.94[ASN][1000 genomes] |
| rs2027035 | 1.00[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.81[AFR][1000 genomes];0.81[AMR][1000 genomes];0.90[ASN][1000 genomes] |
| rs233923 | 0.92[ASN][1000 genomes] |
| rs233925 | 0.92[ASN][1000 genomes] |
| rs233938 | 0.92[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes] |
| rs233940 | 0.92[CHB][hapmap];0.96[CHD][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes] |
| rs233944 | 0.92[ASN][1000 genomes] |
| rs233947 | 0.92[ASN][1000 genomes] |
| rs6914192 | 0.85[CHB][hapmap] |
| rs6916800 | 0.85[CHB][hapmap] |
| rs7752454 | 0.85[CHB][hapmap] |
| rs7754913 | 0.85[CHB][hapmap] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv470861 | chr6:132291785-132351866 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS | Chromatin interactive region | 4 gene(s) | inside rSNPs | diseases |
| 2 | nsv886673 | chr6:132299748-132363507 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS | Chromatin interactive region | 4 gene(s) | inside rSNPs | diseases |
| 3 | nsv427768 | chr6:132300468-132398477 | Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS | Chromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
