Variant report

Variant	rs11154660
Chromosome Location	chr6:132388870-132388871
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	6:132269655-132282174..6:132386945-132395246	GM12878	blood:
2	6:132182612-132191683..6:132386945-132395246	Hela-S3	cervix:

Variant related genes	Relation type
ENSG00000197594	Chromatin interaction
ENSG00000227220	Chromatin interaction
ENSG00000118523	Chromatin interaction

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10457577	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11154658	1.00[CHB][hapmap];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11154661	0.92[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12200142	0.92[CHB][hapmap]
rs12202220	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12207504	0.85[CHB][hapmap]
rs12209559	0.92[ASN][1000 genomes]
rs12527561	0.84[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs2027035	0.85[CHB][hapmap]
rs2327197	0.84[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs233938	0.92[CHB][hapmap]
rs233940	0.92[CHB][hapmap]
rs6914192	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs6916800	0.92[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6929597	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs723071	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72987800	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7752454	0.93[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7754913	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv427768	chr6:132300468-132398477	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:132384400-132389200	Enhancers	HUVEC	blood vessel
2	chr6:132385200-132390600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr6:132385200-132391400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr6:132385400-132389000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr6:132385400-132391600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr6:132385400-132391600	Weak transcription	HSMMtube	muscle
7	chr6:132385800-132390400	Weak transcription	Osteobl	bone
8	chr6:132386200-132390400	Weak transcription	Muscle Satellite Cultured Cells	--
9	chr6:132386200-132391600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr6:132386200-132394200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr6:132387000-132391200	Weak transcription	HSMM	muscle
12	chr6:132387400-132391600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr6:132387600-132391400	Weak transcription	HMEC	breast
14	chr6:132387600-132391400	Weak transcription	NHEK	skin
15	chr6:132388200-132389400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr6:132388400-132389000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr6:132388400-132389200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr6:132388600-132389000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr6:132388800-132389200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
20	chr6:132388800-132389200	Enhancers	NHDF-Ad	bronchial

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