Variant report

No.	Distal block	Cell Line	Cell type
1	6:132269655-132282174..6:132373869-132383497	GM12878	blood:
2	6:132176847-132180372..6:132373869-132383497	K562	blood:
3	6:132182612-132191683..6:132373869-132383497	Hela-S3	cervix:

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10457577	0.86[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11154660	1.00[CHB][hapmap];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11154661	1.00[CHB][hapmap];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12200142	0.92[CHB][hapmap]
rs12202220	1.00[CHB][hapmap];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12207504	0.85[CHB][hapmap]
rs12209559	0.95[ASN][1000 genomes]
rs12527561	0.84[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs2027035	0.85[CHB][hapmap]
rs2327197	0.84[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs233938	0.92[CHB][hapmap]
rs233940	0.92[CHB][hapmap]
rs3966747	0.88[YRI][hapmap]
rs6914192	1.00[CHB][hapmap];0.97[ASN][1000 genomes]
rs6916800	1.00[CHB][hapmap];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6929597	0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs723071	0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72987800	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7752454	1.00[CHB][hapmap];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7754913	1.00[CHB][hapmap];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9321321	0.94[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv427768	chr6:132300468-132398477	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:132375000-132384800	Weak transcription	Pancreas	Pancrea
2	chr6:132376200-132380600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr6:132376600-132384400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr6:132378600-132381800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr6:132379200-132381800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr6:132379200-132385600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr6:132379200-132386200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr6:132379400-132380800	Enhancers	Osteobl	bone
9	chr6:132379400-132381000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr6:132379400-132383400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr6:132379400-132385600	Enhancers	NHDF-Ad	bronchial
12	chr6:132379600-132386200	Enhancers	Muscle Satellite Cultured Cells	--
13	chr6:132379800-132383600	Enhancers	Brain Germinal Matrix	brain
14	chr6:132379800-132384400	Weak transcription	Fetal Heart	heart
15	chr6:132380000-132380800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr6:132380200-132382000	Enhancers	NHLF	lung
17	chr6:132380200-132383800	Enhancers	HUVEC	blood vessel
18	chr6:132380400-132382000	Weak transcription	Colon Smooth Muscle	Colon
19	chr6:132380400-132382600	Weak transcription	Ovary	ovary

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