Variant report

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ENPP1-3	chr6:132411673-132411866	XLOC_005464
2	lnc-ENPP1-3	chr6:132411672-132411866	NONHSAT114937

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10457577	0.84[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs11154658	1.00[CHB][hapmap];0.84[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs11154660	1.00[CHB][hapmap];0.88[JPT][hapmap];0.84[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs11154661	0.84[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.96[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs11758168	0.81[CEU][hapmap]
rs12200142	0.92[CHB][hapmap]
rs12202220	1.00[CHB][hapmap];0.88[CHD][hapmap];0.86[JPT][hapmap];0.85[MEX][hapmap];0.96[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs12207504	0.85[CHB][hapmap]
rs12209559	0.83[ASN][1000 genomes]
rs1358772	0.81[CEU][hapmap]
rs2027035	0.85[CHB][hapmap]
rs2327197	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs233938	0.92[CHB][hapmap]
rs233940	0.92[CHB][hapmap]
rs6914192	1.00[CHB][hapmap];0.88[JPT][hapmap];0.85[ASN][1000 genomes]
rs6916800	0.84[CEU][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.96[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs6929597	0.84[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs723071	0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72987800	0.96[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs7752454	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs7754913	0.84[CEU][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap];0.88[JPT][hapmap];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2762616	chr6:132404708-132584324	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:132407200-132420400	Weak transcription	Aorta	Aorta
2	chr6:132408200-132417600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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