Variant report
| Variant | rs723071 |
|---|---|
| Chromosome Location | chr6:132419850-132419851 |
| allele | A/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:1)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | lncRNA name | Chromosome Location | lncRNA alias |
|---|---|---|---|
| 1 | lnc-ENPP1-3 | chr6:132419818-132421535 | NONHSAT114937 |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:19)
| rs_ID | r2[population] |
|---|---|
| rs10457577 | 1.00[AMR][1000 genomes];0.89[ASN][1000 genomes] |
| rs11154658 | 1.00[CHB][hapmap];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs11154660 | 0.93[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs11154661 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs12200142 | 0.92[CHB][hapmap] |
| rs12202220 | 0.92[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs12207504 | 0.85[CHB][hapmap] |
| rs12209559 | 0.83[ASN][1000 genomes] |
| rs12527561 | 0.84[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2027035 | 0.85[CHB][hapmap] |
| rs2327197 | 0.84[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs233938 | 0.92[CHB][hapmap] |
| rs233940 | 0.92[CHB][hapmap] |
| rs6914192 | 1.00[CHB][hapmap];0.89[JPT][hapmap];0.85[ASN][1000 genomes] |
| rs6916800 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs6929597 | 1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs72987800 | 0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs7752454 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs7754913 | 0.92[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv2762616 | chr6:132404708-132584324 | Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 22 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr6:132407200-132420400 | Weak transcription | Aorta | Aorta |
