Variant report

Variant	rs68052689
Chromosome Location	chr6:132385732-132385733
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	6:132269655-132282174..6:132384441-132386945	Hela-S3	cervix:

Variant related genes	Relation type
ENSG00000118523	Chromatin interaction
ENSG00000227220	Chromatin interaction

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs11961001	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11962845	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11965300	0.84[ASN][1000 genomes]
rs11967791	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12665838	0.84[ASN][1000 genomes]
rs13203667	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13209044	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13209246	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13214059	0.84[ASN][1000 genomes]
rs13214079	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13217734	0.84[ASN][1000 genomes]
rs17060999	0.91[ASN][1000 genomes]
rs17061002	0.91[ASN][1000 genomes]
rs17061005	0.91[ASN][1000 genomes]
rs17277038	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1980442	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs34520677	0.84[ASN][1000 genomes]
rs34703643	0.84[ASN][1000 genomes]
rs34837500	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs34942968	0.91[ASN][1000 genomes]
rs35023618	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35322316	0.84[ASN][1000 genomes]
rs35599250	0.97[ASN][1000 genomes]
rs35881065	0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4425614	0.89[ASN][1000 genomes]
rs4897557	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs55722159	0.84[ASN][1000 genomes]
rs56079441	0.84[ASN][1000 genomes]
rs56202806	0.84[ASN][1000 genomes]
rs56231728	0.84[ASN][1000 genomes]
rs56317827	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs67724714	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6914252	0.89[ASN][1000 genomes]
rs6922298	0.87[ASN][1000 genomes]
rs71574604	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7740997	0.84[ASN][1000 genomes]
rs7748412	0.89[ASN][1000 genomes]
rs7749832	0.84[ASN][1000 genomes]
rs7762460	0.84[ASN][1000 genomes]
rs7770114	0.89[ASN][1000 genomes]
rs7770134	0.89[ASN][1000 genomes]
rs7770728	0.82[ASN][1000 genomes]
rs7775855	0.84[ASN][1000 genomes]
rs9321320	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9493173	0.97[ASN][1000 genomes]
rs9493175	0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs969522	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv427768	chr6:132300468-132398477	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:132379200-132386200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
2	chr6:132379600-132386200	Enhancers	Muscle Satellite Cultured Cells	--
3	chr6:132381400-132386800	Enhancers	NH-A	brain
4	chr6:132381800-132387000	Enhancers	HSMM	muscle
5	chr6:132383800-132385800	Enhancers	Osteobl	bone
6	chr6:132383800-132386200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr6:132384000-132387600	Enhancers	HMEC	breast
8	chr6:132384400-132386000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr6:132384400-132386200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr6:132384400-132387000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr6:132384400-132387400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr6:132384400-132387600	Enhancers	NHEK	skin
13	chr6:132384400-132389200	Enhancers	HUVEC	blood vessel
14	chr6:132384600-132386000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr6:132385200-132386000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr6:132385200-132386600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
17	chr6:132385200-132386800	Weak transcription	Fetal Heart	heart
18	chr6:132385200-132387200	Weak transcription	Ovary	ovary
19	chr6:132385200-132390600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
20	chr6:132385200-132391400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr6:132385400-132386600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr6:132385400-132388800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
23	chr6:132385400-132389000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr6:132385400-132391600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
25	chr6:132385400-132391600	Weak transcription	HSMMtube	muscle
26	chr6:132385600-132386000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
27	chr6:132385600-132386600	Weak transcription	A549	lung
28	chr6:132385600-132388400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
29	chr6:132385600-132388800	Weak transcription	NHDF-Ad	bronchial

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