Variant report

Variant	rs4897557
Chromosome Location	chr6:132426204-132426205
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs11961001	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11962845	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11967791	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs13203667	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs13209044	0.84[EUR][1000 genomes]
rs13209246	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs13214079	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs17277038	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1980442	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs34837500	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs35023618	0.96[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs56317827	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs67724714	0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs68052689	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs71574604	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9321320	0.82[EUR][1000 genomes]
rs9493175	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2762616	chr6:132404708-132584324	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:132423200-132436800	Weak transcription	Aorta	Aorta
2	chr6:132423600-132435400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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