Variant report

Variant	rs67724714
Chromosome Location	chr6:132425922-132425923
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	6:132269655-132282174..6:132424270-132433961	H1-hESC	embryonic stem cell:	embryo
2	6:132182612-132191683..6:132424270-132433961	Hela-S3	cervix:

Variant related genes	Relation type
ENSG00000227220	Chromatin interaction
ENSG00000197594	Chromatin interaction
ENSG00000118523	Chromatin interaction

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs11961001	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11962845	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11965300	0.86[ASN][1000 genomes]
rs11967791	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12665838	0.86[ASN][1000 genomes]
rs13203667	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13209044	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13209246	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13214059	0.86[ASN][1000 genomes]
rs13214079	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13217734	0.86[ASN][1000 genomes]
rs17277038	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1980442	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2014218	0.91[ASN][1000 genomes]
rs34254593	0.91[ASN][1000 genomes]
rs34520677	0.86[ASN][1000 genomes]
rs34703643	0.86[ASN][1000 genomes]
rs34837500	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35023618	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs35322316	0.86[ASN][1000 genomes]
rs35442626	0.91[ASN][1000 genomes]
rs35599250	0.85[ASN][1000 genomes]
rs35881065	0.83[ASN][1000 genomes]
rs4425614	0.82[ASN][1000 genomes]
rs4897557	0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs55687705	0.91[ASN][1000 genomes]
rs55722159	0.86[ASN][1000 genomes]
rs56079441	0.86[ASN][1000 genomes]
rs56202806	0.86[ASN][1000 genomes]
rs56231728	0.86[ASN][1000 genomes]
rs56317827	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60353841	0.91[ASN][1000 genomes]
rs68052689	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs71574604	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7740997	0.86[ASN][1000 genomes]
rs7749832	0.86[ASN][1000 genomes]
rs7758139	0.91[ASN][1000 genomes]
rs7758288	0.91[ASN][1000 genomes]
rs7762460	0.86[ASN][1000 genomes]
rs7770114	0.82[ASN][1000 genomes]
rs7770134	0.82[ASN][1000 genomes]
rs7770728	0.84[ASN][1000 genomes]
rs7772154	0.91[ASN][1000 genomes]
rs7775855	0.86[ASN][1000 genomes]
rs9321320	0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9493173	0.85[ASN][1000 genomes]
rs9493175	0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs969522	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2762616	chr6:132404708-132584324	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:132423200-132436800	Weak transcription	Aorta	Aorta
2	chr6:132423600-132435400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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