Variant report

Variant	rs9493175
Chromosome Location	chr6:132380895-132380896
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	6:132269655-132282174..6:132373869-132383497	GM12878	blood:
2	6:132176847-132180372..6:132373869-132383497	K562	blood:
3	6:132182612-132191683..6:132373869-132383497	Hela-S3	cervix:

Variant related genes	Relation type
ENSG00000118523	Chromatin interaction
ENSG00000227220	Chromatin interaction
ENSG00000197594	Chromatin interaction

Extended variants
information (count: 55 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs11961001	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[TSI][hapmap];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11962845	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];1.00[GIH][hapmap];0.88[JPT][hapmap];0.83[TSI][hapmap];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11965300	0.82[ASN][1000 genomes]
rs11967791	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12332897	0.86[JPT][hapmap]
rs12662375	0.86[JPT][hapmap]
rs12665838	0.82[ASN][1000 genomes]
rs13203667	0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13209044	1.00[CEU][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13209246	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13214059	0.82[ASN][1000 genomes]
rs13214079	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13217734	0.82[ASN][1000 genomes]
rs17060999	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs17061002	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs17061005	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs17277038	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1980442	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34520677	0.82[ASN][1000 genomes]
rs34703643	0.82[ASN][1000 genomes]
rs34837500	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs34942968	0.88[ASN][1000 genomes]
rs35023618	0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35322316	0.82[ASN][1000 genomes]
rs35599250	1.00[ASN][1000 genomes]
rs35881065	0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs41529847	0.89[CEU][hapmap]
rs4425614	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs4897557	0.80[EUR][1000 genomes]
rs55722159	0.82[ASN][1000 genomes]
rs56079441	0.82[ASN][1000 genomes]
rs56202806	0.82[ASN][1000 genomes]
rs56231728	0.82[ASN][1000 genomes]
rs56317827	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs67724714	0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs68052689	0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6914252	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs6922298	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs71574604	0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7740997	0.82[ASN][1000 genomes]
rs7748412	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs7749832	0.82[ASN][1000 genomes]
rs7758139	1.00[CHB][hapmap];0.84[CHD][hapmap];1.00[JPT][hapmap]
rs7762460	0.82[ASN][1000 genomes]
rs7770114	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs7770134	1.00[CHB][hapmap];0.84[CHD][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs7772154	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7775855	0.82[ASN][1000 genomes]
rs9321320	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.97[LWK][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9483384	0.86[JPT][hapmap]
rs9493173	0.86[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs9493179	0.86[JPT][hapmap]
rs9493181	0.86[JPT][hapmap]
rs969522	1.00[CHB][hapmap];0.84[CHD][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv427768	chr6:132300468-132398477	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs9493175	TAAR6	cis	parietal	SCAN
rs9493175	TAAR2	cis	cerebellum	SCAN

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:132375000-132384800	Weak transcription	Pancreas	Pancrea
2	chr6:132376600-132384400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr6:132378600-132381800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr6:132379200-132381800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr6:132379200-132385600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr6:132379200-132386200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr6:132379400-132381000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr6:132379400-132383400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr6:132379400-132385600	Enhancers	NHDF-Ad	bronchial
10	chr6:132379600-132386200	Enhancers	Muscle Satellite Cultured Cells	--
11	chr6:132379800-132383600	Enhancers	Brain Germinal Matrix	brain
12	chr6:132379800-132384400	Weak transcription	Fetal Heart	heart
13	chr6:132380200-132382000	Enhancers	NHLF	lung
14	chr6:132380200-132383800	Enhancers	HUVEC	blood vessel
15	chr6:132380400-132382000	Weak transcription	Colon Smooth Muscle	Colon
16	chr6:132380400-132382600	Weak transcription	Ovary	ovary
17	chr6:132380600-132381800	Weak transcription	Rectal Smooth Muscle	rectum
18	chr6:132380800-132381200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
19	chr6:132380800-132381200	Weak transcription	Osteobl	bone
20	chr6:132380800-132384400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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