Variant report

Variant	rs12662375
Chromosome Location	chr6:132460736-132460737
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	6:132182612-132191683..6:132459405-132471553	GM12878	blood:
2	6:132459405-132471553..6:132646256-132647474	Hela-S3	cervix:
3	6:132269655-132282174..6:132459405-132471553	H1-hESC	embryonic stem cell:	embryo

Variant related genes	Relation type
ENSG00000227220	Chromatin interaction
ENSG00000197594	Chromatin interaction
ENSG00000118523	Chromatin interaction
ENSG00000079931	Chromatin interaction

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs11961001	0.86[JPT][hapmap]
rs11967791	0.86[JPT][hapmap]
rs12110962	1.00[ASN][1000 genomes]
rs12332897	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12661294	0.90[CHB][hapmap];0.84[EUR][1000 genomes]
rs13209044	1.00[JPT][hapmap]
rs13209246	0.86[JPT][hapmap]
rs13214079	0.86[JPT][hapmap]
rs17060999	0.86[JPT][hapmap]
rs17061002	0.86[JPT][hapmap]
rs17061005	0.86[JPT][hapmap]
rs17061068	0.81[CHB][hapmap];0.88[TSI][hapmap]
rs17277038	0.86[JPT][hapmap]
rs1980442	0.86[JPT][hapmap]
rs41529847	0.89[CHB][hapmap];0.87[CHD][hapmap];0.85[ASN][1000 genomes]
rs4425614	0.82[JPT][hapmap]
rs56796210	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6914252	1.00[JPT][hapmap]
rs6920628	0.81[CEU][hapmap];0.88[CHD][hapmap];0.92[GIH][hapmap]
rs6922298	0.86[JPT][hapmap]
rs73781421	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73781422	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73781424	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7748412	0.86[JPT][hapmap]
rs7758139	0.86[JPT][hapmap]
rs7770114	0.86[JPT][hapmap]
rs7770134	0.86[JPT][hapmap]
rs7772154	0.86[JPT][hapmap]
rs9321320	0.86[JPT][hapmap]
rs9483384	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9493175	0.86[JPT][hapmap]
rs9493178	1.00[ASN][1000 genomes]
rs9493179	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9493181	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9654641	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs969522	0.86[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2762616	chr6:132404708-132584324	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:132454400-132461000	Weak transcription	Aorta	Aorta
2	chr6:132455600-132461200	Weak transcription	Brain Inferior Temporal Lobe	brain
3	chr6:132455600-132463800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr6:132456600-132461400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr6:132457200-132461800	Enhancers	Primary B cells from peripheral blood	blood
6	chr6:132458600-132463000	Weak transcription	HSMMtube	muscle
7	chr6:132459600-132494800	Weak transcription	Primary B cells from cord blood	blood
8	chr6:132459800-132462800	Weak transcription	Osteobl	bone
9	chr6:132460000-132462400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr6:132460600-132461400	Genic enhancers	HUVEC	blood vessel

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