Variant report

Variant	rs12110962
Chromosome Location	chr6:132437814-132437815
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs12332897	1.00[ASN][1000 genomes]
rs12662375	1.00[ASN][1000 genomes]
rs41529847	0.85[ASN][1000 genomes]
rs56796210	1.00[ASN][1000 genomes]
rs73781421	1.00[ASN][1000 genomes]
rs73781422	1.00[ASN][1000 genomes]
rs73781424	1.00[ASN][1000 genomes]
rs9483384	1.00[ASN][1000 genomes]
rs9493178	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9493179	1.00[ASN][1000 genomes]
rs9493181	1.00[ASN][1000 genomes]
rs9654641	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2762616	chr6:132404708-132584324	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:132435200-132438200	Enhancers	NH-A	brain
2	chr6:132435200-132442400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr6:132437600-132438000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr6:132437600-132438000	Enhancers	Ovary	ovary
5	chr6:132437600-132438000	Enhancers	Rectal Mucosa Donor 31	rectum
6	chr6:132437600-132438000	Enhancers	HMEC	breast
7	chr6:132437600-132438000	Enhancers	NHEK	skin
8	chr6:132437600-132438200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr6:132437600-132438800	Enhancers	Breast Myoepithelial Primary Cells	Breast
10	chr6:132437600-132438800	Weak transcription	Liver	Liver
11	chr6:132437600-132439200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr6:132437600-132442400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr6:132437800-132438000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr6:132437800-132438000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
15	chr6:132437800-132438000	Enhancers	Osteobl	bone
16	chr6:132437800-132438200	Enhancers	HUVEC	blood vessel

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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