Variant report

Variant	rs73781421
Chromosome Location	chr6:132444269-132444270
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	6:132176847-132180372..6:132441471-132451441	K562	blood:
2	6:132182612-132191683..6:132441471-132451441	Hela-S3	cervix:
3	6:132441471-132451441..6:132646256-132647474	K562	blood:
4	6:132269655-132282174..6:132441471-132451441	GM12878	blood:

Variant related genes	Relation type
ENSG00000079931	Chromatin interaction
ENSG00000197594	Chromatin interaction
ENSG00000118523	Chromatin interaction
ENSG00000227220	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs12110962	1.00[ASN][1000 genomes]
rs12332897	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12661294	0.84[EUR][1000 genomes]
rs12662375	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41529847	0.85[ASN][1000 genomes]
rs56796210	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73781422	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73781424	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9483384	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9493178	1.00[ASN][1000 genomes]
rs9493179	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9493181	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9654641	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2762616	chr6:132404708-132584324	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:132442400-132445200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr6:132442400-132446000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr6:132443200-132445800	Enhancers	Breast Myoepithelial Primary Cells	Breast
4	chr6:132443400-132444400	Enhancers	Primary hematopoietic stem cells short term culture	blood
5	chr6:132443400-132444600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr6:132443400-132444800	Enhancers	Brain Substantia Nigra	brain
7	chr6:132443400-132444800	Enhancers	HMEC	breast
8	chr6:132443400-132444800	Enhancers	NH-A	brain
9	chr6:132443400-132445000	Enhancers	Fetal Heart	heart
10	chr6:132443400-132445000	Enhancers	Fetal Muscle Leg	muscle
11	chr6:132443400-132445200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr6:132443400-132445200	Enhancers	Brain Germinal Matrix	brain
13	chr6:132443400-132445400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr6:132443600-132444400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr6:132443600-132444800	Flanking Active TSS	Brain Hippocampus Middle	brain
16	chr6:132443600-132444800	Weak transcription	Placenta	Placenta
17	chr6:132443600-132444800	Bivalent Enhancer	HepG2	liver
18	chr6:132443600-132445200	Enhancers	Brain Inferior Temporal Lobe	brain
19	chr6:132443600-132445400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
20	chr6:132443800-132444600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
21	chr6:132443800-132445000	Enhancers	Cortex derived primary cultured neurospheres	brain
22	chr6:132443800-132445000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
23	chr6:132444000-132444400	Active TSS	Brain Angular Gyrus	brain
24	chr6:132444200-132444600	Active TSS	Brain Cingulate Gyrus	brain
25	chr6:132444200-132445400	Enhancers	Brain Anterior Caudate	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links