Variant report

Variant	rs12661294
Chromosome Location	chr6:132483263-132483264
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs12332897	0.90[CHB][hapmap];0.82[EUR][1000 genomes]
rs12662375	0.90[CHB][hapmap];0.84[EUR][1000 genomes]
rs12717183	0.85[ASN][1000 genomes]
rs17061068	0.87[CEU][hapmap];0.90[CHB][hapmap];0.82[JPT][hapmap];0.80[ASN][1000 genomes]
rs2327199	0.84[ASN][1000 genomes]
rs56796210	0.84[EUR][1000 genomes]
rs6920628	0.82[CHB][hapmap];0.82[ASN][1000 genomes]
rs73781421	0.84[EUR][1000 genomes]
rs73781422	0.84[EUR][1000 genomes]
rs73781424	0.84[EUR][1000 genomes]
rs9483384	0.90[CHB][hapmap];0.84[EUR][1000 genomes]
rs9493179	0.90[CHB][hapmap];0.84[EUR][1000 genomes]
rs9493181	0.90[CHB][hapmap];0.84[EUR][1000 genomes]
rs9654641	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2762616	chr6:132404708-132584324	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:132459600-132494800	Weak transcription	Primary B cells from cord blood	blood
2	chr6:132475200-132485800	Weak transcription	HSMMtube	muscle
3	chr6:132482600-132488800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr6:132482600-132489400	Weak transcription	Aorta	Aorta
5	chr6:132482800-132486200	Weak transcription	HUVEC	blood vessel

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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