Variant report

Variant	rs17061068
Chromosome Location	chr6:132513955-132513956
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs12332897	0.81[CHB][hapmap];0.88[TSI][hapmap]
rs12661294	0.87[CEU][hapmap];0.90[CHB][hapmap];0.82[JPT][hapmap];0.80[ASN][1000 genomes]
rs12662375	0.81[CHB][hapmap];0.88[TSI][hapmap]
rs6920628	0.83[GIH][hapmap]
rs9483384	0.81[CHB][hapmap];0.88[TSI][hapmap]
rs9493179	0.81[CHB][hapmap]
rs9493181	0.81[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2762616	chr6:132404708-132584324	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:132509600-132514200	Enhancers	Osteobl	bone
2	chr6:132509600-132514600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr6:132511600-132514000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr6:132512000-132514000	Weak transcription	Stomach Smooth Muscle	stomach
5	chr6:132512000-132523800	Weak transcription	Aorta	Aorta
6	chr6:132512200-132520000	Weak transcription	HMEC	breast
7	chr6:132512800-132514000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr6:132512800-132514000	Weak transcription	HSMM	muscle
9	chr6:132512800-132519600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr6:132513000-132514200	Weak transcription	Muscle Satellite Cultured Cells	--
11	chr6:132513000-132518600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr6:132513400-132518600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr6:132513600-132514400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr6:132513800-132514400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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