Variant report

Variant	rs9493181
Chromosome Location	chr6:132454127-132454128
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	FOS	chr6:132454127-132454359	MCF10A-Er-Src	breast:	n/a	chr6:132454210-132454218
2	PBX3	chr6:132453614-132454540	SK-N-SH	brain:	n/a	n/a
3	POLR2A	chr6:132451556-132457610	HUVEC	blood vessel:	n/a	n/a
4	TCF12	chr6:132453540-132454563	SK-N-SH	brain:	n/a	n/a
5	JUND	chr6:132453510-132454472	SK-N-SH	brain:	n/a	chr6:132454210-132454218
6	POLR2A	chr6:132451723-132457447	HUVEC	blood vessel:	n/a	n/a
7	JUN	chr6:132453611-132454427	HUVEC	blood vessel:	n/a	chr6:132454210-132454218
8	GATA3	chr6:132452025-132454614	SK-N-SH	brain:	n/a	chr6:132453521-132453529 chr6:132452653-132452663 chr6:132453717-132453727 chr6:132452653-132452660 chr6:132453024-132453033 chr6:132453519-132453532 chr6:132452651-132452660 chr6:132452651-132452661 chr6:132453729-132453742 chr6:132453560-132453576 chr6:132453567-132453574
9	POLR2A	chr6:132454100-132454198	ProgFib	skin:	n/a	n/a
10	MAZ	chr6:132452743-132454457	IMR90	lung:	n/a	chr6:132453025-132453034
11	FOS	chr6:132454118-132454361	MCF10A-Er-Src	breast:	n/a	chr6:132454210-132454218
12	POLR2A	chr6:132452037-132454754	IMR90	lung:	n/a	n/a
13	POLR2A	chr6:132453475-132454743	HUVEC	blood vessel:	n/a	n/a
14	FOS	chr6:132454066-132454365	MCF10A-Er-Src	breast:	n/a	chr6:132454210-132454218
15	FOSL2	chr6:132453646-132454497	SK-N-SH	brain:	n/a	chr6:132454210-132454218
16	POLR2A	chr6:132451762-132455651	HUVEC	blood vessel:	n/a	n/a
17	POLR2A	chr6:132454098-132454588	HUVEC	blood vessel:	n/a	n/a
18	POLR2A	chr6:132454113-132454407	SK-N-SH	brain:	n/a	n/a
19	GATA3	chr6:132452599-132454487	SK-N-SH	brain:	n/a	chr6:132453521-132453529 chr6:132452653-132452663 chr6:132453717-132453727 chr6:132452653-132452660 chr6:132453024-132453033 chr6:132453519-132453532 chr6:132452651-132452660 chr6:132452651-132452661 chr6:132453729-132453742 chr6:132453560-132453576 chr6:132453567-132453574
20	FOS	chr6:132453584-132454582	HUVEC	blood vessel:	n/a	chr6:132454210-132454218
21	GATA2	chr6:132453563-132454566	HUVEC	blood vessel:	n/a	chr6:132453717-132453727 chr6:132453729-132453742 chr6:132453567-132453574
22	CEBPB	chr6:132454087-132454475	IMR90	lung:	n/a	n/a

Variant related genes	Relation type
LINC01013	TF binding region

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs11961001	0.86[JPT][hapmap]
rs11967791	0.86[JPT][hapmap]
rs12110962	1.00[ASN][1000 genomes]
rs12332897	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12661294	0.90[CHB][hapmap];0.84[EUR][1000 genomes]
rs12662375	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13209044	1.00[JPT][hapmap]
rs13209246	0.86[JPT][hapmap]
rs13214079	0.86[JPT][hapmap]
rs17060999	0.86[JPT][hapmap]
rs17061002	0.86[JPT][hapmap]
rs17061005	0.86[JPT][hapmap]
rs17061068	0.81[CHB][hapmap]
rs17277038	0.86[JPT][hapmap]
rs1980442	0.86[JPT][hapmap]
rs41529847	0.89[CHB][hapmap];0.85[ASN][1000 genomes]
rs4425614	0.82[JPT][hapmap]
rs56796210	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6914252	1.00[JPT][hapmap]
rs6920628	0.81[CEU][hapmap]
rs6922298	0.86[JPT][hapmap]
rs73781421	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73781422	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73781424	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7748412	0.86[JPT][hapmap]
rs7758139	0.86[JPT][hapmap]
rs7770114	0.86[JPT][hapmap]
rs7770134	0.86[JPT][hapmap]
rs7772154	0.86[JPT][hapmap]
rs9321320	0.86[JPT][hapmap]
rs9483384	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9493175	0.86[JPT][hapmap]
rs9493178	1.00[ASN][1000 genomes]
rs9493179	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.80[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9654641	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs969522	0.86[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2762616	chr6:132404708-132584324	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:75 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:132450400-132456600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr6:132451000-132455600	Enhancers	Fetal Stomach	stomach
3	chr6:132451200-132455000	Enhancers	Primary B cells from peripheral blood	blood
4	chr6:132451200-132455400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr6:132451200-132455600	Enhancers	Fetal Muscle Leg	muscle
6	chr6:132451400-132454400	Enhancers	Ovary	ovary
7	chr6:132451400-132454600	Enhancers	Rectal Smooth Muscle	rectum
8	chr6:132451400-132454800	Enhancers	Right Atrium	heart
9	chr6:132451400-132455400	Enhancers	iPS-18 Cell Line	embryonic stem cell
10	chr6:132451400-132455600	Enhancers	iPS-15b Cell Line	embryonic stem cell
11	chr6:132451400-132455600	Enhancers	NHLF	lung
12	chr6:132451400-132456000	Enhancers	Primary hematopoietic stem cells	blood
13	chr6:132451600-132454200	Weak transcription	Aorta	Aorta
14	chr6:132451600-132454400	Enhancers	Fetal Heart	heart
15	chr6:132451600-132454600	Enhancers	Skeletal Muscle Male	skeletal muscle
16	chr6:132451600-132455000	Enhancers	HUES48 Cell Line	embryonic stem cell
17	chr6:132451600-132455000	Enhancers	HUES64 Cell Line	embryonic stem cell
18	chr6:132451600-132455600	Enhancers	ES-I3 Cell Line	embryonic stem cell
19	chr6:132451600-132455600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr6:132451600-132455600	Enhancers	Adipose Nuclei	Adipose
21	chr6:132451800-132454600	Enhancers	HUES6 Cell Line	embryonic stem cell
22	chr6:132451800-132455200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr6:132451800-132455600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
24	chr6:132451800-132455600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
25	chr6:132452000-132454400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
26	chr6:132452000-132454400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
27	chr6:132452000-132454400	Enhancers	Skeletal Muscle Female	skeletal muscle
28	chr6:132452000-132454600	Enhancers	Breast Myoepithelial Primary Cells	Breast
29	chr6:132452200-132454200	Enhancers	Stomach Mucosa	stomach
30	chr6:132452200-132454600	Enhancers	ES-WA7 Cell Line	embryonic stem cell
31	chr6:132452200-132454600	Bivalent Enhancer	Cortex derived primary cultured neurospheres	brain
32	chr6:132452200-132454800	Enhancers	H9 Cell Line	embryonic stem cell
33	chr6:132452200-132456000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
34	chr6:132452400-132454600	Enhancers	Fetal Intestine Small	intestine
35	chr6:132452400-132455000	Enhancers	Brain Angular Gyrus	brain
36	chr6:132452400-132455600	Enhancers	Brain Cingulate Gyrus	brain
37	chr6:132452600-132454200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
38	chr6:132452600-132454600	Enhancers	Primary B cells from cord blood	blood
39	chr6:132452600-132454600	Enhancers	Brain Inferior Temporal Lobe	brain
40	chr6:132452600-132454600	Enhancers	HMEC	breast
41	chr6:132452600-132455000	Enhancers	HSMMtube	muscle
42	chr6:132452600-132455400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
43	chr6:132452600-132455400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
44	chr6:132452600-132455600	Enhancers	Primary hematopoietic stem cells short term culture	blood
45	chr6:132452800-132454200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
46	chr6:132452800-132454200	Enhancers	Small Intestine	intestine
47	chr6:132452800-132454400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
48	chr6:132452800-132454600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
49	chr6:132452800-132454800	Enhancers	NH-A	brain
50	chr6:132452800-132455600	Enhancers	Brain Hippocampus Middle	brain

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