Variant report

Variant	rs1980442
Chromosome Location	chr6:132403010-132403011
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	6:132269655-132282174..6:132402790-132406656	H1-hESC	embryonic stem cell:	embryo

Variant related genes	Relation type
ENSG00000118523	Chromatin interaction
ENSG00000227220	Chromatin interaction

Extended variants
information (count: 61 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:61)

rs_ID	r²[population]
rs11961001	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11962845	0.95[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];1.00[YRI][hapmap];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11965300	0.86[ASN][1000 genomes]
rs11967791	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12332897	0.86[JPT][hapmap]
rs12662375	0.86[JPT][hapmap]
rs12665838	0.86[ASN][1000 genomes]
rs13203667	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13209044	0.92[CEU][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13209246	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13214059	0.86[ASN][1000 genomes]
rs13214079	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13217734	0.86[ASN][1000 genomes]
rs17060999	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs17061002	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs17061005	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs17277038	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2014218	0.82[ASN][1000 genomes]
rs34254593	0.82[ASN][1000 genomes]
rs34520677	0.86[ASN][1000 genomes]
rs34703643	0.86[ASN][1000 genomes]
rs34837500	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs34942968	0.88[ASN][1000 genomes]
rs35023618	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35322316	0.86[ASN][1000 genomes]
rs35442626	0.82[ASN][1000 genomes]
rs35599250	0.95[ASN][1000 genomes]
rs35881065	0.93[ASN][1000 genomes]
rs41529847	0.84[CEU][hapmap]
rs4425614	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs4897557	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs55687705	0.82[ASN][1000 genomes]
rs55722159	0.86[ASN][1000 genomes]
rs56079441	0.86[ASN][1000 genomes]
rs56202806	0.86[ASN][1000 genomes]
rs56231728	0.86[ASN][1000 genomes]
rs56317827	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs60353841	0.82[ASN][1000 genomes]
rs67724714	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs68052689	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6914252	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs6922298	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs71574604	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7740997	0.86[ASN][1000 genomes]
rs7748412	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs7749832	0.86[ASN][1000 genomes]
rs7758139	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs7758288	0.82[ASN][1000 genomes]
rs7762460	0.86[ASN][1000 genomes]
rs7770114	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs7770134	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs7770728	0.84[ASN][1000 genomes]
rs7772154	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs7775855	0.86[ASN][1000 genomes]
rs9321320	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9483384	0.86[JPT][hapmap]
rs9493173	0.95[ASN][1000 genomes]
rs9493175	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9493179	0.86[JPT][hapmap]
rs9493181	0.86[JPT][hapmap]
rs969522	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:132392000-132405000	Weak transcription	HMEC	breast
2	chr6:132392000-132405400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr6:132396000-132406200	Weak transcription	Aorta	Aorta
4	chr6:132402400-132405000	Weak transcription	NHLF	lung
5	chr6:132402400-132406400	Weak transcription	Ovary	ovary
6	chr6:132402600-132405000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr6:132403000-132403400	Weak transcription	HUVEC	blood vessel
8	chr6:132403000-132406000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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