Variant report

Variant	rs56317827
Chromosome Location	chr6:132421751-132421752
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs11961001	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11962845	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11965300	0.86[ASN][1000 genomes]
rs11967791	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12665838	0.86[ASN][1000 genomes]
rs13203667	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13209044	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13209246	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13214059	0.86[ASN][1000 genomes]
rs13214079	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13217734	0.86[ASN][1000 genomes]
rs17277038	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1980442	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2014218	0.91[ASN][1000 genomes]
rs34254593	0.91[ASN][1000 genomes]
rs34520677	0.86[ASN][1000 genomes]
rs34703643	0.86[ASN][1000 genomes]
rs34837500	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35023618	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs35322316	0.86[ASN][1000 genomes]
rs35442626	0.91[ASN][1000 genomes]
rs35599250	0.85[ASN][1000 genomes]
rs35881065	0.83[ASN][1000 genomes]
rs4425614	0.82[ASN][1000 genomes]
rs4897557	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs55687705	0.91[ASN][1000 genomes]
rs55722159	0.86[ASN][1000 genomes]
rs56079441	0.86[ASN][1000 genomes]
rs56202806	0.86[ASN][1000 genomes]
rs56231728	0.86[ASN][1000 genomes]
rs60353841	0.91[ASN][1000 genomes]
rs67724714	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs68052689	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs71574604	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7740997	0.86[ASN][1000 genomes]
rs7749832	0.86[ASN][1000 genomes]
rs7758139	0.91[ASN][1000 genomes]
rs7758288	0.91[ASN][1000 genomes]
rs7762460	0.86[ASN][1000 genomes]
rs7770114	0.82[ASN][1000 genomes]
rs7770134	0.82[ASN][1000 genomes]
rs7770728	0.84[ASN][1000 genomes]
rs7772154	0.91[ASN][1000 genomes]
rs7775855	0.86[ASN][1000 genomes]
rs9321320	0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9493173	0.85[ASN][1000 genomes]
rs9493175	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs969522	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2762616	chr6:132404708-132584324	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:132420600-132423600	Enhancers	Fetal Heart	heart
2	chr6:132420800-132422800	Weak transcription	Aorta	Aorta
3	chr6:132421200-132421800	Active TSS	Brain Substantia Nigra	brain
4	chr6:132421200-132423600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr6:132421400-132422200	Enhancers	Osteobl	bone
6	chr6:132421600-132422000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr6:132421600-132422000	Enhancers	Brain Cingulate Gyrus	brain
8	chr6:132421600-132422000	Enhancers	Duodenum Smooth Muscle	Duodenum
9	chr6:132421600-132422000	Enhancers	Fetal Lung	lung
10	chr6:132421600-132422800	Enhancers	HSMMtube	muscle

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